BAC Information

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BAC

Clone NameMSMg01-416L05
Chromosome10 (Build37)
Map Location 28,167,774 - 28,168,261
singlet/doubletsinglet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416L05.T7 (MSMg01no416_l05.b1)MSMg01-416L05.TJ (MSMg01no416_l05.g1)
ACCAG512455AG512456
length743745
length of high quality
(start - end)
529 (36 - 564)492 (67 - 558)
definitionCHROMAT_FILE: MSMg01no416_l05.b1 PHD_FILE: MSMg01no416_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:23 2005CHROMAT_FILE: MSMg01no416_l05.g1 PHD_FILE: MSMg01no416_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAGGC
ACATACTTCCATATGGTAAAAGAAATTTATAGGAAACCAACAGCCAACAT
CAAATTAAATGGAGAGAAACTAGAAGCAATCCCACTAAAATCCAGGTTGT
CTTGTGACAAACTTGCCACTCTCTCTCTACCTATTCAATAAAGTACTCCA
AGTTCTAGCCAGAGCAATTAGGAGCAAAAGGAGGTCAAGGGGATACAAAT
TGGAAAGGAAAACGTCATATATCACTATTTGCAGATGATAGGATACTATG
CATAAGTGATGCCCAAAATTCTACCAGAGAACTCCTACAGCTGATAAACA
ACTTCAGCAAAGTGGCAGGATATAAAATTAACTCAGATAGTCAGTGGCCT
TCCTTTACACAAAAGATAAAAATGCTGAGAAAGAAATTGGGGAAACAACA
CCCTTCACAATAGCCACAAATAAATTATTAAATATCTTGGTGTAACTCTA
CCAAGCAAGTGAAAGATTTTTACAACAAGAACTACAACCCCCCGCCCAAA
AAAAGAAATCAAAGAAAGCCTCAGGAGATAGAAAGATTTCCCATGTTCAT
GGATTGGTAGGAATAACATAGTGAGAATGTCCACCTTTACAAAAGCAATC
TAAAGATTTCATGCAATCCCCATCAAAATTCCAACATAATTCTTCAAAGA
CATGTGAAGATAATATCCCAACTTCATATGCAAAAACAAACAA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAATCTCTGGTACCTAAAAGACAGACAGAGAAAAA
CAACTTCCACACAATGTCCTCTGACCACCCGCACACACCCACATAAATAC
CCAAAAACACACACAAAACAGATAGAGTCTTAATTTTTTAAAAATGAAAT
AGAACTATAAATACGTTCTGTCCTGTGTACCATTGGGAATGTGACATCAT
AATAATTTTTGTGTAGCCTTAGGGGAACTACTGACAGACAGAAAAATTCT
ACTCTGGTCTTTCTCTTTTATCTTTCTAACCTATCAAGTAGTAACTCAGA
ATTATAGGCCGATGAAAATGATCTCAAGCAAGTCTTTGGTGGCTGGCAGT
TCTGAGCATCTATATCTAATGTGAACCCAAAAAGGAGATATTTCAGGGCA
AAATTCTTTTTGTGACCTGTCAGGATTGGCAACTATATCTTCCTCGGAGG
CTAAAAGGTTAATTATTTTCATCTAAAGACCTTTCCTCTGTTTGGTTGTA
CTCCCGAATACATGATTTTTTTCATGTTTTATTGAAACATTGGATATGTT
TTCTGATCTTTTTCTCTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTTTTT
TTCCTAAAAGATCTAAAAGGCCTTATGTTAACACGGCAGTAATTATTTTT
TTCTTGCGTGATCCCCACTTTAAAAAACATTCCAGCCCCCAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_l05.g1 MSMg01no416_l05.g1 CHROMAT_FILE:
MSMg01no416_l05.g1 PHD_FILE: MSMg01no416_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:23 2005
         (492 letters)



>mm_chr10_28167574_28168465
          Length = 892

 Score =  920 bits (476), Expect = 0.0
 Identities = 485/488 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatctctggtacctaaaagacagacagagaaaaacaacttccacacaatgtcctctgacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatctctggtacctaaaagacagacagagaaaaacaacttccacacaatgtcctctgacc 260

                                                                       
Query: 61  acccgcacacacccacataaatacccaaaaacacacacaaaacagatagagtcttaattt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 acccgcacacacccacataaatacccagaaacacacacaaaacagatagagtcttaattt 320

                                                                       
Query: 121 tttaaaaatgaaatagaactataaatacgttctgtcctgtgtaccattgggaatgtgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaaaaatgaaatagaactataaatacgttctgtcctgtgtaccattgggaatgtgaca 380

                                                                       
Query: 181 tcataataatttttgtgtagccttaggggaactactgacagacagaaaaattctactctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcataataatttttgtgtagccttaggggaactactgacagacagaaaaattctactctg 440

                                                                       
Query: 241 gtctttctcttttatctttctaacctatcaagtagtaactcagaattataggccgatgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtctttctcttttatctttctaacctatcaagtagtaactcagaattataggccgatgaa 500

                                                                       
Query: 301 aatgatctcaagcaagtctttggtggctggcagttctgagcatctatatctaatgtgaac 360
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 aatgatctcaagcaagtctttggtggctggcagttctgagcatctatacctaatgtgaac 560

                                                                       
Query: 361 ccaaaaaggagatatttcagggcaaaattctttttgtgacctgtcaggattggcaactat 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccagaaaggagatatttcagggcaaaattctttttgtgacctgtcaggattggcaactat 620

                                                                       
Query: 421 atcttcctcggaggctaaaaggttaattattttcatctaaagacctttcctctgtttggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atcttcctcggaggctaaaaggttaattattttcatctaaagacctttcctctgtttggt 680

                   
Query: 481 tgtactcc 488
           ||||||||
Sbjct: 681 tgtactcc 688


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)