BAC Information

Click to search

BAC

Clone NameMSMg01-416O02
Chromosome10 (Build37)
Map Location 127,968,421 - 127,968,774
singlet/doubletsinglet
Overlap genenone
Upstream geneNxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4, Cs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b, Mbc2
Downstream geneZc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-416O02.T7 (MSMg01no416_o02.b1)MSMg01-416O02.TJ (MSMg01no416_o02.g1)
ACCAG512592AG512593
length730735
length of high quality
(start - end)		356 (18 - 373)379 (58 - 436)
definitionCHROMAT_FILE: MSMg01no416_o02.b1 PHD_FILE: MSMg01no416_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:36 2005CHROMAT_FILE: MSMg01no416_o02.g1 PHD_FILE: MSMg01no416_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTATTTCGAGAGGATCCGCGGAATTCATCACTTTTCCAATGTGT
CCAACCAGGGTTCACCAACTCACCCTAACACAGATTTATTTTTCCCCTTA
CAAACTCCTGCAAAAACTGTCTGCTGCTTGCTCTCTGTCTGTTCCCCCCT
CCTCTGCAGCCCTTCTTGTCCATCCCGGATAATAAATCTTTGTGTTGATA
ACTTGGTATCTGGGATGTTCTAAGCTGACCCCAAGATGGCGTCAAAGCTT
TACAGATAAAAATTTTAAAGAATATGCTGGGTATGGTGGCAGACACCTTA
ATCTCACCATTTAGGAGGGAAAGACAGGTTGATCTCTTTTTTGTGTTTTG
GGGGGGGGTATTTATTTATTTATTNNNNTNTNNTTNNNNNNNNNNNNTTT
TTTTTTTTTTTTTTTNTTTTTTTNNNTTTNTTTNTTTTTTTTTTTTTTTN
TTTTTTNTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTNTNTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTNTTTT
TTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTAATTTTTTTTTTTNTTTTTTTTTNTTTTTTTTTTTTTTT
CTTTTTTTTNTTNTTTTTTTTTTTTTTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTACAATAAGAGTCCCGATTTTCCAGCCTGGACTAGAGTTCC
AGGACAGCCAAGATTACACAGAGAAACCTTGTCTCGGAAAAATAAAAAGA
AAGCGGAGGGAGGCGAGAAGGAGGGAGTGTGTGTGGGAGAGAGAGAGAGA
GAGAGAGATAGAGACCGGATTTTGTGCCCCACATGGAGACCGAGACAAAC
GGATCTCTGTGAGTTCGAAGACAACCTGGACTTTTGAACGCATTCCAGCC
AACAAGGGCTGCATTATGAGATGTTTCCAAAAAGCAGGCGAGAGTGCTGG
AGAAACAGCACCGCTGTTAAGAGCGCAAGCCGCTCTTGCAGAAGACCAAA
GTTCAGCTCCAGCACCCAAGTTAGGCTCACGACCGCCTAGACCCTCTGCT
CCAGGGCACCTGCTGCTTCTGTGATAACTTATATGCAGACCCACAGTACC
TCCCATCATTTATAATAACATACCTTATTCTTTTTCTTTGTTTGATCCCC
GGGTTTGGCTCGTTCTTACAAATTCGCCTGGTCCCTTTCGTATTGTTTTT
CTCTCCGCAGTGGGGGCCGATTTGTCGTTCGCCGATTCTCGTCTCTCGCT
ACTAGCCGCTATATTCCTTTTTTTTTCTTCGTTTTTGATCACGTTCGTTT
GTAATCGCTTTATCCGTTTTCGGTTTTCTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no416_o02.b1 MSMg01no416_o02.b1 CHROMAT_FILE:
MSMg01no416_o02.b1 PHD_FILE: MSMg01no416_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:36 2005
         (356 letters)



>mm_chr10_127968212_127968967
          Length = 756

 Score =  607 bits (314), Expect = e-178
 Identities = 341/354 (96%), Gaps = 7/354 (1%)
 Strand = Plus / Plus

                                                                       
Query: 10  gaattcatcacttttccaatgtgtccaaccagggttcaccaactcaccctaacacagatt 69
           |||||||||||||  | ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 210 gaattcatcacttggctaatgtgtccaaccagggttcaccaactcaccctaacacaaatt 269

                                                                       
Query: 70  tatttttccccttacaaactcctgcaaaaactgtctgctgcttgctctctgtctgttccc 129
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tatttttccccttacaaactcctgcaaaaactgtctgctgcttgctctctgtctgttccc 329

                                                                       
Query: 130 ccctcctctgcagcccttcttgtccatcccggataataaatctttgtgttgataacttgg 189
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 330 ccctcctctgcagcccttcttgtccatcccggataataaatctttgtgctgataacttgg 389

                                                                       
Query: 190 tatctgggatgttctaagctgaccccaagatggcgtcaaagctttacagataaaaatttt 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tatctgggatgttctaagctgaccccaagatggcgtcaaagctttacagataaaaatttt 449

                                                                       
Query: 250 aaagaatatgctgggtatggtggcagacaccttaatctcaccatttaggagggaaagaca 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 450 aaagaatatgctgggtatggtggcagacaccttaatctcaccatttaggagggaaggaca 509

                                                                 
Query: 310 ggttgatctcttttttgtgtttt-------gggggggggtatttatttatttat 356
           |||||||||||||||||||||||       ||||||||||||||||||||||||
Sbjct: 510 ggttgatctcttttttgtgtttttttttttgggggggggtatttatttatttat 563


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |