BAC Information

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BAC

Clone NameMSMg01-417H15
Chromosome10 (Build37)
Map Location 75,285,337 - 75,481,803
singlet/doubletdoublet
Overlap geneGstt2, Mif, Derl3, Smarcb1, Mmp11, Ndg2, Gm867, Vpreb3, EG333669
Upstream geneEG623346, Gnaz, LOC100040057, Rab36, Bcr, Specc1l, LOC100040670, Adora2a, EG544707, Upb1, 1110038D17Rik, Snrpd3, AI646023, Ggt1, Ggtla1, Susd2, Cabin1, Ddt, Gstt3, Gstt1, Gstt4
Downstream geneSuhw2, Slc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3, LOC100041099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417H15.T7 (MSMg01no417_h15.b1)MSMg01-417H15.TJ (MSMg01no417_h15.g1)
ACCAG513047AG513048
length760771
length of high quality
(start - end)		547 (75 - 621)469 (79 - 547)
definitionCHROMAT_FILE: MSMg01no417_h15.b1 PHD_FILE: MSMg01no417_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:22 2005CHROMAT_FILE: MSMg01no417_h15.g1 PHD_FILE: MSMg01no417_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,481,448 - 75,481,803)(75,285,337 - 75,285,805)
sequence
NATTTAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTATCCTTTCCGATTCCCATTAGACCTTTTGTGTTTGCATTCCT
CTGTTTTATGTAAGATTCCGGTTACCTCATTTGTACCTTGTCACCCAACT
TCCTTATTGTCTTCTGCATAAAAAGTCTGATGCTCGATTTGAAAAATACA
TTCAGATTCCACACGACCTCTCCTGTGTGCGTCTGTTTGTCACTCATCCT
ACGCTTTGTCCACCCGGGACAAGAGACCCGTTCCACGCAGACAAAGGGGC
CCAGAGGGTCTGCGGCATGTATTATGTTGAGGCACAAAACCAGACAGTAC
AAATTCCCTGCCTCAATAGAGTCTATCCTTGAAGTGTAAGCTAGAATAAA
CTTTTTATTCTGTAAACTGCTCTGTCAGACTATTTTATCACAGCTCTGAG
AAAAATAACTGAGACCAGTATATATACATGCAGTACTGTAATAATGGCAT
AGGTCACTCTTCGTTACTGTAAGGGATGTCAAATCTGACATAAGGCATTC
CTTTCATCATTGTGAGTTTTGTAGATCTCCTGCAATTAAAAACAATCCAC
TGGGAAGATGGCTTGAAAGACTCCGAGAGGAGCCCCTCGCTCAGGCCTCA
GGACTATAGCGGACACCCAAGAACTCACGACAGACCGAGCTTTGTTGCAA
CCACATGAAGGTTTATTCTGGGAATAGCAAAGATTTGGTGAAGACTTATA
TCCACCCCAA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACCACAGCAAGGATTCTAAG
GAGAGCTGGGGGTGGTGCAGGGCTGGGATAGGCTCCTGTTATGTGTAAGC
TCTGTGGTTTAGCCTCATAGACATCTGTCTGAGAAGGCTCCATGCTTGAG
CCTTCCCAGGGCCAGCCCCTCTCTGAAAAACAGGACAAGAGAGGCTTTGA
ATATCCAGAATGAGAAAAAGACAGAGACTGAGTTTGCATAGCCTGGAGTA
AAGACTGGGGCATCCATGGGTAAATCTCTGAAACGTGATTGGGAAAAGAT
TGGAGAGAGGTAGTCAGTACACCTTGGACTTTAAATGTCCTCTGAAGCTC
ATGCCTTAAAGGTATAGTTCCTTCTGGGCAGTGGTGGTGCATACCTTTCA
TCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAG
CCTGTTCTACAGAGTGAATTTCAGGACTATACAGAGAAACCCTTCTCAAA
CAAAACAAAACAAAACAATAAACAAACTAAAAGGTATAGTTCCTGGAAGC
ATGGAATGCGGTTGGGGGCTTTATAAGGTGGTGCACAGAAAAATTGGCAG
TGTAGCCCCCTGTTTTATAAGCTTAGCCTGGTTCCCATTATAATGTCCCC
CTTTCATTCCTTACCTTCTGACCTGTGCTTTTTCCTAATTCCTTGGCACC
TCTAACAACATTTTTTTTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_h15.b1 MSMg01no417_h15.b1 CHROMAT_FILE:
MSMg01no417_h15.b1 PHD_FILE: MSMg01no417_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:22 2005
         (547 letters)



>mm_chr10_75480857_75481803
          Length = 947

 Score =  665 bits (344), Expect = 0.0
 Identities = 353/356 (99%)
 Strand = Plus / Minus

                                                                       
Query: 192 gggacaagagacccgttccacgcagacaaaggggcccagagggtctgcggcatgtattat 251
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 947 gggactagagacccgttccacgcagacaaaggggcccagagggtctgcggcatgtatcag 888

                                                                       
Query: 252 gttgaggcacaaaaccagacagtacaaattccctgcctcaatagagtctatccttgaagt 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 gttgaggcacaaaaccagacagtacaaattccctgcctcaatagagtctatccttgaagt 828

                                                                       
Query: 312 gtaagctagaataaactttttattctgtaaactgctctgtcagactattttatcacagct 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gtaagctagaataaactttttattctgtaaactgctctgtcagactattttatcacagct 768

                                                                       
Query: 372 ctgagaaaaataactgagaccagtatatatacatgcagtactgtaataatggcataggtc 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 ctgagaaaaataactgagaccagtatatatacatgcagtactgtaataatggcataggtc 708

                                                                       
Query: 432 actcttcgttactgtaagggatgtcaaatctgacataaggcattcctttcatcattgtga 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 actcttcgttactgtaagggatgtcaaatctgacataaggcattcctttcatcattgtga 648

                                                                   
Query: 492 gttttgtagatctcctgcaattaaaaacaatccactgggaagatggcttgaaagac 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gttttgtagatctcctgcaattaaaaacaatccactgggaagatggcttgaaagac 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no417_h15.g1 MSMg01no417_h15.g1 CHROMAT_FILE:
MSMg01no417_h15.g1 PHD_FILE: MSMg01no417_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:22 2005
         (469 letters)



>mm_chr10_75285137_75286005
          Length = 869

 Score =  884 bits (457), Expect = 0.0
 Identities = 466/469 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaccacagcaaggattctaaggagagctgggggtggtgcagggctgggataggctcctg 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ttaccacagcaaggattctaaggagagctgggggtggtgcggggctgggataggctcctg 260

                                                                       
Query: 61  ttatgtgtaagctctgtggtttagcctcatagacatctgtctgagaaggctccatgcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatgtgtaagctctgtggtttagcctcatagacatctgtctgagaaggctccatgcttg 320

                                                                       
Query: 121 agccttcccagggccagcccctctctgaaaaacaggacaagagaggctttgaatatccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccttcccagggccagcccctctctgaaaaacaggacaagagaggctttgaatatccag 380

                                                                       
Query: 181 aatgagaaaaagacagagactgagtttgcatagcctggagtaaagactggggcatccatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgagaaaaagacagagactgagtttgcatagcctggagtaaagactggggcatccatg 440

                                                                       
Query: 241 ggtaaatctctgaaacgtgattgggaaaagattggagagaggtagtcagtacaccttgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 ggtaaatctctgaaacgtgattgggaaaagattggagagaggtagtcagtacatcttgga 500

                                                                       
Query: 301 ctttaaatgtcctctgaagctcatgccttaaaggtatagttccttctgggcagtggtggt 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttaaatgtcctctgaagcccatgccttaaaggtatagttccttctgggcagtggtggt 560

                                                                       
Query: 361 gcatacctttcatcccagcacttgggaggcagaggcaggcagatttctgagttcaaggcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatacctttcatcccagcacttgggaggcagaggcaggcagatttctgagttcaaggcc 620

                                                            
Query: 421 agcctgttctacagagtgaatttcaggactatacagagaaacccttctc 469
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agcctgttctacagagtgaatttcaggactatacagagaaacccttctc 669


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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