BAC Information

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BAC

Clone NameMSMg01-417I11
Chromosome10 (Build37)
Map Location 13,459,118 - 13,459,361
singlet/doubletsinglet
Overlap geneAig1
Upstream geneUtrn, LOC665172, Stx11, Sf3b5, Plagl1, 4930519B02Rik, Ltv1, LOC666829, Phactr2, LOC100039475, Fuca2, Pex3, Deadc1
Downstream geneEG666859, Hivep2, Gpr126, LOC100039571, LOC100039409, Vta1, D230044M03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417I11.T7 (MSMg01no417_i11.b1)MSMg01-417I11.TJ (MSMg01no417_i11.g1)
ACCAG513087AG513088
length747736
length of high quality
(start - end)
244 (71 - 314)465 (81 - 545)
definitionCHROMAT_FILE: MSMg01no417_i11.b1 PHD_FILE: MSMg01no417_i11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:26 2005CHROMAT_FILE: MSMg01no417_i11.g1 PHD_FILE: MSMg01no417_i11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:36:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGATCATXXXXXXXXXXXXXXXXXXXXXXXXXATCCAAAGAGGATCCGCG
GAATTCATTATTGCACTGAAACTCAAAGCATGGTATCATTAATGCTAGGC
AGTGTACCAAACAGGAAAACTCTTGCTTTTGGGGGCCAGGCAGAGAGGTG
GAGTTTTAGTGGCAGCATTTATTGGTCACATGGTTACAGCAAGTCACTTC
ACTGGTTGGAGCCGAAATGTCTTTAGAAAGAGAAGCAAAGATAGTAACTG
TCTGTCCTTCAAAGAGGCATGATGATCGTCCCAGTGAAAACACGAAAGTG
AAATGCGGCTCAGTGTTTTTCACCCACTGGGGTTGCGCGGAAGTAAGTGC
GATTTAGCTAGTGCTGCTCGTTTTGCTTACCGTTGGAAGAGGAGACTAGA
TAAGCAGATGGCCACATGATACAAGGACCCATGTCTACTGTCGTAGAGGC
TGCCCAAGTGATAGCGCAGCCTCCTGCTTGCTAGATTGGCTCTTCTTCAC
ACAGTCTTATTACGACCGTATGCGTCTTTCCTTGCTCGTCCTTCCTCGGT
TACTCGGTGCCTATTTTCCCCTATCCCGTCCCCACCACCCTCCCCACCTT
CCCTGTTCTCCGCTTTCCACCTCTTAATTCCGTATCCCTTTTCTTTAGCC
CCCTCCTACTTTATCCTCCTTTTTCCCTTTCCCTCCTATTTCCTCTCCTT
CCCCCTCTTCTCCTTCATTAAATCATCCACTCTCTTTCCTTTTTTTC
NNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTT
ATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGA
GATGATCATGTGATTTTTGTCTTTGAGTTTGTTTATATAATGGATTACAT
TGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCT
ACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGC
GAGAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTC
TGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTA
ATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTT
GTGAAATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGAT
AGAACTCTGCACTAAACCCATCTGGGCCTGGGCTTTTTTTGGTTGGGAGA
CTATTAATAACTGCTTCTATTTCTTTAAGTGATATGGCACTGTTTACATG
CTTCCCTTGATCCTGATTCACCTTTGTTACCCGGCATCTGTTCCGACATT
TGTCCCCTTTCCCCCACGGCCTTCCTGTTTTGTTGAACACACCCTTTTCT
TACAATGATCTGAACGGGTCTCTGGATTTCTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_i11.b1 MSMg01no417_i11.b1 CHROMAT_FILE:
MSMg01no417_i11.b1 PHD_FILE: MSMg01no417_i11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:26 2005
         (244 letters)



>mm_chr10_13458918_13459561
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcaaagcatggtatcattaatgctaggcagtgtaccaaacaggaaaactcttgctttt 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcaaagcaaggtatcattaatgctaggcagtgtaccaaacaggaaaactcttgctttt 260

                                                                       
Query: 61  gggggccaggcagagaggtggagttttagtggcagcatttattggtcacatggttacagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggggccaggcagagaggtggagttttagtggcagcatttattggtcacatggttacagc 320

                                                                       
Query: 121 aagtcacttcactggttggagccgaaatgtctttagaaagagaagcaaagatagtaactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtcacttcactggttggagccgaaatgtctttagaaagagaagcaaagatagtaactg 380

                                                                       
Query: 181 tctgtccttcaaagaggcatgatgatcgtcccagtgaaaacacgaaagtgaaatgcggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgtccttcaaagaggcatgatgatcgtcccagtgaaaacacgaaagtgaaatgcggct 440

               
Query: 241 cagt 244
           ||||
Sbjct: 441 cagt 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)