NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACTATCGCAATCAAAAAAGCCCCCTTAGTGCACAGGCTCCCAA
TCATTAAAGGGTTTCTTAGAGTGCAGTCTATATTTTAGTCTTTGTCACAT
TAAAAATCATTACTTAATCTGCCCAGCATATGGTCAGTATTCAAATATGT
TTAGGAAATGAATTAATCAAGAATAGAGCATACTGGGATTCTCTCACTGC
TGAATTCTGGGACTTTCTAAATTGGCATAGAAAATGATTAGCTTCAGGTT
CCTATATTAGGTTTACTGTTCACTGAGTCGTCATGTTAGTTCACGTGACT
GTAGTGGCAAAAGTAATTGGAAACTTTACAATTTAACCAGAGCAATCAAC
AAGTTACCTAACGGGAAAGATGGAATTAGATTTCAAATTATAGTCTGCCA
CCTGTGACATTAAAGAAATAATGACAACCCTACTTTCTAGACATTTTACC
TTTTTCAAGGAAAAATTTCCTAGAAAACTCTGTCATCTATGCAGACAACC
TAGAGAGGTGCTCTAGGGTAAAGGCATGCCAAAAAGAAAAAAAGGAAAGC
CATCCAGTGACATCTTTATACACATTGAAAGAAGAACAGTGAATAGGAGA
AAAACTCAACGCTAATGCCACGGTGCAATCCATGGGAATCTGGATCATAG
TAATTTAAGACATTAATTTGTTAAAATGCATGTTTTTAATCTGA

NCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACACTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCTAGATGCCCCTCAACAGCGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAA
GTGGATATTAGCCCCCAAACTAGGATACCCAAGATATAAGATATAATTTG
CTTAACACATGAAACTCACGAAAATGGAAACTGAAGTGTGGAAACTATGC
CCCTCCT

Query= MSMg01no417_k14.b1 MSMg01no417_k14.b1 CHROMAT_FILE:
MSMg01no417_k14.b1 PHD_FILE: MSMg01no417_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:36 2005
         (642 letters)



>mm_chr10_89781643_89782685
          Length = 1043

 Score = 1166 bits (603), Expect = 0.0
 Identities = 633/643 (98%), Gaps = 3/643 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaaagcccccttagtgcacaggctcccaatcattaaagggtttcttagagtgcagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 aaaaaagcccccttagtgcacaggctcccaatcattaaagggtttcttagagtgcagtct 783

                                                                       
Query: 61  atattttagtctttgtcacattaaaaatcattacttaatctgcccagcatatggtcagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 atattttagtctttgtcacattaaaaatcattacttaatctgcccagcatatggtcagta 723

                                                                       
Query: 121 ttcaaatatgt-ttaggaaatgaattaatcaagaatagagcatactgggattctctcact 179
           ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 722 ttcaaatatgtatt-ggaaatgaattaatcaagaatagtgcatactgggattctctcatt 664

                                                                       
Query: 180 gctgaattctgggactttctaaattggcatagaaaatgattagcttcaggttcctatatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gctgaattctgggactttctaaattggcatagaaaatgattagcttcaggttcctatatt 604

                                                                       
Query: 240 aggtttactgttcactgagtcgtcatgttagttcacgtgactgtagtggcaaaagtaatt 299
           ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 603 aggtttactgttcactgagtcgtcacgttagttcatgtgactgtagtggcaaaagtaatt 544

                                                                       
Query: 300 ggaaactttacaatttaaccagagcaatcaacaagttacctaacgggaaagatggaatta 359
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 543 ggaaactttacaatttaaccagagcaatcaacaagttacctaacaggaaagatggaatta 484

                                                                       
Query: 360 gatttcaaattatagtctgccacctgtgacattaaagaaataatgacaaccctactttct 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gatttcaaattatagtctgccacctgtgacattaaagaaataatgacaaccctactttct 424

                                                                       
Query: 420 agacattttacctttttcaaggaaaaatttcctagaaaactctgtcatctatgcagacaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 agacattttacctttttcaaggaaaaatttcctagaaaactctgtcatctatgcagacaa 364

                                                                       
Query: 480 cctagagaggtgctctagggtaaaggcatgccaaaaagaaaaaaa-ggaaagccatccag 538
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 363 cctagagaggtgctctagggtaaaggcatgccaaaaagaaaaaaaaggaaagccatccag 304

                                                                       
Query: 539 tgacatctttatacacattgaaagaagaacagtgaataggagaaaaactcaacgctaatg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgacatctttatacacattgaaagaagaacagtgaataggagaaaaactcaacgctaatg 244

                                                      
Query: 599 ccacggtgcaatccatgggaatctggatcatagtaatttaaga 641
           ||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 243 ccatggtgcaatccatgggaatctagatcatagtaatttaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1043
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1033
Effective search space:   652856
Effective search space used:   652856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)