Query= MSMg01no417_m17.b1 MSMg01no417_m17.b1 CHROMAT_FILE:
MSMg01no417_m17.b1 PHD_FILE: MSMg01no417_m17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:47 2005
(489 letters)
>mm_chr10_12139352_12140239
Length = 888
Score = 855 bits (442), Expect = 0.0
Identities = 475/486 (97%), Gaps = 3/486 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaccccttgacccacatggaatctggtcacctaggatcccagtacagaggcaga 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaccccctgacccacatggaatctggtcacctaggatcccagtacagaggcaga 264
Query: 65 aactggaggatgccggggacttgctggctagccagccttgctcagaaagcaagctccaga 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aactggaggatgctggggacttgctggctagccagccttgctcagaaagcaagctccaga 324
Query: 125 ctcagtgagtgaccctgtctcaatcaataagttgacagcaattgaagatgacaactgatg 184
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 ctcagtgagtgaccctgtctcaatcaataagttgtcagcaattgaagatgacaactgatg 384
Query: 185 tcaatctctaggctccacatacacagatgaactcaagtgtgtgcccacaaatcaaatgtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcaatctctaggctccacatacacagatgaactcaagtgtgtgcccacaaatcaaatgtc 444
Query: 245 atgatcattttgacatgttaaggcaaaaacattaatatttaaaagaaaggagcaggaaat 304
|||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 445 atgatcattttgacatgtaaaggcaaaa-cattaaaatttaaaagaaaggagcaggaaat 503
Query: 305 atccatctatctatggctcctgtgaagggtggagatatttgggatgaaaaatggcgatga 364
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atccatctatctatggctcatgtgaagggtggagatatttgggatgaaaaatggcgatga 563
Query: 365 tttatgaaaatagtgcaaggcaacattgctcaatacaagtctactctcttccctcttaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttatgaaaatagtgcaaggcaacattgctcaatacaagtctactctcttccctcttaga 623
Query: 425 tcccagcacgatgtgatagctgatc-tacaacactatatgccacaatgagctatgtcaaa 483
||||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||
Sbjct: 624 tcccagcacgatgtgatag-tcaacctacaacactatatgccacaatgagctatgtcaaa 682
Query: 484 ggttaa 489
||||||
Sbjct: 683 ggttaa 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 888
Length adjustment: 10
Effective length of query: 479
Effective length of database: 878
Effective search space: 420562
Effective search space used: 420562
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no417_m17.g1 MSMg01no417_m17.g1 CHROMAT_FILE:
MSMg01no417_m17.g1 PHD_FILE: MSMg01no417_m17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:36:47 2005
(537 letters)
>mm_chr10_12223920_12224857
Length = 938
Score = 915 bits (473), Expect = 0.0
Identities = 521/539 (96%), Gaps = 9/539 (1%)
Strand = Plus / Minus
Query: 4 gctgggtgattcc-ccccctcccccaacacatacctttggcaggttgtagattaatgtgc 62
||||||||| ||| ||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 738 gctgggtga-tcctccccc-cccccaacacacacctttggcaggttgtagattaatgtgc 681
Query: 63 taaggaatgcaaattaactatggaagactctctactactctgatttcgtttttattatct 122
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 680 taagaaatgcaaattaactatggaagactctctactactctgatttcatttttattatct 621
Query: 123 agacgacccaacaatattgttaagaagactatgtaaatttgtagtcacttccttaaccca 182
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 620 agacgacccaacaatattgttaagaagactatgtaaatttgtagtcacttcc-taaccca 562
Query: 183 tt----tgcctggctcttcatcagtttgcctgtcatttggtatcagatgtacaaaggtgc 238
|| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 tttgcctgcctggctcttcatcagtttgcctgtcatttggtatcaggtgtacaaaggtgc 502
Query: 239 gcacatagacttctgccttcacttctacctgtgtcttgagccttagccattgccttgtat 298
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 gcacatagacttctgccttcacttctacctgtgtcttgagccttagctattgccttgtat 442
Query: 299 aggtgccaaaggcatgtggttctctcctgatctacacactggaatcttcccccccaaggc 358
||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 aggggccaaaggcgtgtggttctctcctgatctacacactggaatctt-ccccccaaggc 383
Query: 359 tggcgcatggtttttctctgggggaagaaactttctctctttgcaagactcagatgaagc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tggcgcatggtttttctctgggggaagaaactttctctctttgcaagactcagatgaagc 323
Query: 419 cccctccccaggccccaccccacatcatgaggaagcactttggagccaagctcagtgctc 478
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cccctccccagcccccaccccacatcatgaggaagcactttggagccaagctcagtgctc 263
Query: 479 aacttcctgtagtataagatccagaagtcctgagaatttatgatgtatctgagaaaggt 537
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 262 aacttcctgtagtataagatccagaagtcctgagaatttatggtgtatctgagaaaggt 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 938
Length adjustment: 10
Effective length of query: 527
Effective length of database: 928
Effective search space: 489056
Effective search space used: 489056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
