BAC Information

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BAC

Clone NameMSMg01-418B07
Chromosome10 (Build37)
Map Location 87,546,254 - 87,729,796
singlet/doubletdoublet
Overlap genePmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000
Upstream gene1700113H08Rik, Ascl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps
Downstream gene1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418B07.T7 (MSMg01no418_b07.b1)MSMg01-418B07.TJ (MSMg01no418_b07.g1)
ACCAG513506AG513507
length749751
length of high quality
(start - end)		560 (48 - 607)494 (77 - 570)
definitionCHROMAT_FILE: MSMg01no418_b07.b1 PHD_FILE: MSMg01no418_b07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:11 2005CHROMAT_FILE: MSMg01no418_b07.g1 PHD_FILE: MSMg01no418_b07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,546,254 - 87,546,810)(87,729,303 - 87,729,796)
sequence
GGTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCGTATTATACATATTCAAATACTAGAATTACAGATATATGC
CACTATGCCTGGCTCTTTTAATGAATTCTGTAGATTAAACCAAAGTCCTG
ATATTTGCATAGAACAAACTTTATGGAATGAGCTATCATCCCAACCCCAG
AAGAAGAATGTTGAAGGATATTTAAGATTTGGATGGATGACTGGGTAGAT
GGATGGATGGATGGACAGATGGATGGATGAAGTGACAAATGGCTAGACAA
AATTAAGGTATGTTAAGAGCAAGAATTATTGAGTAAAGCAACGATGATAG
TAAAGGGTACTTATTATACATGGAAATGATGAAAAAGACAGCAGGTATAC
CAGTTATCCAGATGCTTTCACTATCCAGTCTAGCACACACAGGAAAATGC
AATCTTATAAATGAGTGACACGTTTAACTTATATAGAAGAAACCACTACA
TTGTAAAAATGTTTTAGGAGTTTAGAGTTTGAAATATGATAAGTAGGAAT
GTCTGTGGGGCAAGACATCCGTGAGAGTACATTCCTAACATGCATAACAA
TGAAGATTCAATGTAGCTTTACAGTAAATAATGTGAAGAAACCTGGGATT
ATGAATCAATGTATAAATATAACAATTCTTTGTGGTAACCCAATGGTGAA
AGAAATCATCACATTGTTTTTTCTGAAGAAAGATTCCAATGACTCCTAA

CGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGAGCAGTAATGAATGGAGTGG
CCAATAGCAAAGGCTTGAAAGTGGAATTGTCTTGGGTTCAAAATCTTGCT
TTGGCAGTCATAGGATCGTTGGTATGGGGTAGTTTTCCTTAACTAACTAT
ACCTAAACTTTAGTTCATCTGCTCAAATGTGTTTTGTAAGGATAGTCTTG
GTCAGACACTTGACATGAGAGTGATGATACACCTTGTGCCCTGTATCATA
GTATAGCTGACAACTATATTTATTATGTGTGGGCTTAACCCAAGAGTTAT
CTGGCAGGGAGTGAACAACTGCTCTGGATTGAAATTGCTGAGGTAAATTT
AAAACACCTGAGTATTCAACAGCAATTCCAATTAAACACCACAGTAAGAT
TTTGTTTGATTACGATTATGTCTCTTGAATAATTTTCAAGCAAATGGCTT
TATAGTCCCAGATCTATGGTGCCATACGAATGATTTTTTTTTTCTCTAAA
GAGCATCAGTTTACTTTCAAAATCAAACTCAAGTCTTTGGAGACTAATAT
CTTTTCTCTCCATATTTTGCCACTACCAAGTCTGGTGTCCTGCCCAGGTA
ACATGTTAAAAAATTTAAGCTTGCAAATTTCCTTGGCCATGGGAACTTTC
AAATCGGTTCCCAATTTACCAAAAACAGCCAGCTTTACCAGGAAATTTTC
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_b07.b1 MSMg01no418_b07.b1 CHROMAT_FILE:
MSMg01no418_b07.b1 PHD_FILE: MSMg01no418_b07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:11 2005
         (560 letters)



>mm_chr10_87546051_87547010
          Length = 960

 Score = 1069 bits (553), Expect = 0.0
 Identities = 556/557 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttcgtattatacatattcaaatactagaattacagatatatgccactatgcct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttcgtattatacatattcaaatactagaattacagatatatgccactatgcct 263

                                                                       
Query: 64  ggctcttttaatgaattctgtagattaaaccaaagtcctgatatttgcatagaacaaact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggctcttttaatgaattctgtagattaaaccaaagtcctgatatttgcatagaacaaact 323

                                                                       
Query: 124 ttatggaatgagctatcatcccaaccccagaagaagaatgttgaaggatatttaagattt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttatggaatgagctatcatcccaaccccagaagaagaatgttgaaggatatttaagattt 383

                                                                       
Query: 184 ggatggatgactgggtagatggatggatggatggacagatggatggatgaagtgacaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggatggatgactgggtagatggatggatggatggacagatggatggatgaagtgacaaat 443

                                                                       
Query: 244 ggctagacaaaattaaggtatgttaagagcaagaattattgagtaaagcaacgatgatag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggctagacaaaattaaggtatgttaagagcaagaattattgagtaaagcaacgatgatag 503

                                                                       
Query: 304 taaagggtacttattatacatggaaatgatgaaaaagacagcaggtataccagttatcca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taaagggtacttattatacatggaaatgatgaaaaagacagcaggtataccagttatcca 563

                                                                       
Query: 364 gatgctttcactatccagtctagcacacacaggaaaatgcaatcttataaatgagtgaca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gatgctttcactatccagtctagcacacacaggaaaatgcaatcttataaatgagtgaca 623

                                                                       
Query: 424 cgtttaacttatatagaagaaaccactacattgtaaaaatgttttaggagtttagagttt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cgtttaacttatatagaagaaaccactacattgtaaaaatgttttaggagtttagagttt 683

                                                                       
Query: 484 gaaatatgataagtaggaatgtctgtggggcaagacatccgtgagagtacattcctaaca 543
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaaatataataagtaggaatgtctgtggggcaagacatccgtgagagtacattcctaaca 743

                            
Query: 544 tgcataacaatgaagat 560
           |||||||||||||||||
Sbjct: 744 tgcataacaatgaagat 760


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no418_b07.g1 MSMg01no418_b07.g1 CHROMAT_FILE:
MSMg01no418_b07.g1 PHD_FILE: MSMg01no418_b07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:11 2005
         (494 letters)



>mm_chr10_87729103_87729996
          Length = 894

 Score =  932 bits (482), Expect = 0.0
 Identities = 491/494 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgagcagtaatgaatggagtggccaatagcaaaggcttgaaagtggaattgtcttggg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 attgagcagtaatgaatgcagtggccaatagcaaaggcttgaaagtggaattgtcttggg 635

                                                                       
Query: 61  ttcaaaatcttgctttggcagtcataggatcgttggtatggggtagttttccttaactaa 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 634 ttcaaaatcttgctttggcagtcataggatcgttggtatgggctagttttccttaactaa 575

                                                                       
Query: 121 ctatacctaaactttagttcatctgctcaaatgtgttttgtaaggatagtcttggtcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ctatacctaaactttagttcatctgctcaaatgtgttttgtaaggatagtcttggtcaga 515

                                                                       
Query: 181 cacttgacatgagagtgatgatacaccttgtgccctgtatcatagtatagctgacaacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cacttgacatgagagtgatgatacaccttgtgccctgtatcatagtatagctgacaacta 455

                                                                       
Query: 241 tatttattatgtgtgggcttaacccaagagttatctggcagggagtgaacaactgctctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 tatttattatgtgtgggcttaacccaagagttatctggcagggagtgaacaactgctctg 395

                                                                       
Query: 301 gattgaaattgctgaggtaaatttaaaacacctgagtattcaacagcaattccaattaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gattgaaattgctgaggtaaatttaaaacacctgagtattcaacagcaattccaattaaa 335

                                                                       
Query: 361 caccacagtaagattttgtttgattacgattatgtctcttgaataattttcaagcaaatg 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 caccacattaagattttgtttgattacgattatgtctcttgaataattttcaagcaaatg 275

                                                                       
Query: 421 gctttatagtcccagatctatggtgccatacgaatgattttttttttctctaaagagcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gctttatagtcccagatctatggtgccatacgaatgattttttttttctctaaagagcat 215

                         
Query: 481 cagtttactttcaa 494
           ||||||||||||||
Sbjct: 214 cagtttactttcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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