BAC Information

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BAC

Clone NameMSMg01-418B23
Chromosome10 (Build37)
Map Location 110,981,050 - 110,981,497
singlet/doubletsinglet
Overlap genenone
Upstream gene9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8, Bbs10, Nap1l1, EG382421, Phlda1
Downstream geneKrr1, Glipr1, EG639527, Glipr1l1, Glipr1l2, LOC627895, Glipr1l3, Caps2, Kcnc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418B23.T7 (MSMg01no418_b23.b1)MSMg01-418B23.TJ (MSMg01no418_b23.g1)
ACCAG513538AG513539
length768889
length of high quality
(start - end)
452 (49 - 500)90 (74 - 163)
definitionCHROMAT_FILE: MSMg01no418_b23.b1 PHD_FILE: MSMg01no418_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:14 2005CHROMAT_FILE: MSMg01no418_b23.g1 PHD_FILE: MSMg01no418_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGAGACCTCCCAAGATGATAATGTTATCCAAGCAAACAGG
ACAAAGAAAGAGGGCACAGATGGGCTTATAACACCACAGGAGGAAAATAC
AAAAATTGTAAGGGTTCTTAAGAACTCTGTTCTTCTAACGGAGAGGGGGC
ATAGCAGCGCCTTGGGGCTCATGTAAAGTAGCCCCCACCCCAGCCCCATA
CTTGGCATCCGAGTGACTCATCCAGAAAGCTATCCACTGCGTGCAGCAAA
GAGGAAATGAATCATAGGAGTTTCTGACCTTTGCCCTTGTCATTCTTCAT
GGCAGTGGGGGCTGGGAGGGGGAACCACCCACAGACCGGCTCACAGTGCT
GGAGAAGAGGCAGGTCAAACAAGGCACACACAGAAATGATGCAAATGCAT
TGGCTGGGAGAGCTGGAGACTCGGGTCAGGAGAGACAAGCTCAGCAAATA
CAGACAGTCATTCTATGATACAGAGAGCAGAGCCTATGCGTTGGCACGGA
TGGCAGTTAGCAGTGCCCAGTGGTGTCTTGTGCAGTCATGTGGAACTCTC
CCACTCCTACCCGGGTGGGAATGGGGGGAGCAAAAAAAAAAACCAGGATT
TTGAATTCCCTTCTAATTCGGGCTTAAAAAATTTGTTGGTTGTTTAAAAA
AACCCTTGATCCCCCCGCGGTAGGTGTAAAGACTTGTTCACATATTCTCA
AGGGTTCCACACTTCCCC
TTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGTATAGTGAGGATAACTTCAAACT
CCTGGTCTTTCTGAAGCAGTGAGATCAAGAGTTCGCACCGCCCGAGAGGG
GTGGGGGTGGGGAGGNNNNTCTTNGNTNTTTTTTTTTTTTTTTCTTTGTT
TTTTTTGGTTTTTTGTTTTTTTTTTTTGTTTGTTTCGTCTCCCTTGGTTT
GCTTTTTTTTTTGCCTTTCTTCTTTTCTTTCCTTTTCTCTTCTTCTTTTC
CTTTTTCTTTCTGCCGTCCGCTTTTTTTTTTTTTCCCTCCCCCCCCCCCG
CCGCGCCTTCGCCCTTTTTTTTTCCTTTCCCTCTTCCGTCTTTTCTCTTT
TTTTCCGTCCTTTCTTTTTCCTCCTCCCTTCCTTTTCTTCTCCTCTTTTT
CTTTCTCCTTCTTCTTTCTCTTCTTTTCCTTCTTTTTTCCTCTCTTTTTT
TTTTCTCTTCTCTTTTTTCTTCTTTTCCTCCTTTTCTTTCTTTTTTTTCC
CTCCTTTTTTTCCTTCCTTTTCTCCTTCCTTTCTCTTTTTCCCCTTTCCT
TCTCCCTTCCTTCTCCTTTCCTTTTTCTTTTCTTCCTCTTCTCGCCTTTC
CTTTTTCTCCTCTTTTCTCTTTCTTCTGCTCCTCCTCCCTTTCCTTTTTT
TCTCCTTTTCCTTTCCTCTTTCCCCCTTTTCCTCTTCTTCTCTTTTCCCT
TTCTCTTCTTCCTTCCTCCTTTTTTTCTGCCCCCTCCCTTTCCTTTCCTT
CTTTTTCCCTTCCCTTTCCCTTTCTCTTTTTCTTTTCCCTCTTCTTTTCC
GCTCTCCCCTCTTCCCTTTTTCCCTCCTTCTTCTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_b23.b1 MSMg01no418_b23.b1 CHROMAT_FILE:
MSMg01no418_b23.b1 PHD_FILE: MSMg01no418_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:14 2005
         (452 letters)



>mm_chr10_110980846_110981697
          Length = 852

 Score =  812 bits (420), Expect = 0.0
 Identities = 441/448 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaggagacctcccaagatgataatgttatccaagcaaacaggacaaagaaagag 64
           ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gaattcaaggagaccacaaaagatgataatgttatccaagcaaacaggacaaagaaagag 593

                                                                       
Query: 65  ggcacagatgggcttataacaccacaggaggaaaatacaaaaattgtaagggttcttaag 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 592 ggcacagatgggcttataacaccacaggaggaaaatacaaaaattgtaagggctcttaag 533

                                                                       
Query: 125 aactctgttcttctaacggagagggggcatagcagcgccttggggctcatgtaaagtagc 184
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 532 aactctgttcttctaacggagagggggcatagcagcgccttggggttcatgtaaaggagc 473

                                                                       
Query: 185 ccccaccccagccccatacttggcatccgagtgactcatccagaaagctatccactgcgt 244
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ccccaccccagtcccatacttggcatccgagtgactcatccagaaagctatccactgcgt 413

                                                                       
Query: 245 gcagcaaagaggaaatgaatcataggagtttctgacctttgcccttgtcattcttcatgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gcagcaaagaggaaatgaatcataggagtttctgacctttgcccttgtcattcttcatgg 353

                                                                       
Query: 305 cagtgggggctgggagggggaaccacccacagaccggctcacagtgctggagaagaggca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cagtgggggctgggagggggaaccacccacagaccggctcacagtgctggagaagaggca 293

                                                                       
Query: 365 ggtcaaacaaggcacacacagaaatgatgcaaatgcattggctgggagagctggagactc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ggtcaaacaaggcacacacagaaatgatgcaaatgcattggctgggagagctggagactc 233

                                       
Query: 425 gggtcaggagagacaagctcagcaaata 452
           ||||||||||||||||||||||||||||
Sbjct: 232 gggtcaggagagacaagctcagcaaata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)