BAC Information

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BAC

Clone NameMSMg01-418D20
Chromosome10 (Build37)
Map Location 88,930,662 - 88,931,174
singlet/doubletsinglet
Overlap geneNr1h4
Upstream geneSycp3, Chpt1, 8030451F13Rik, LOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d, Gas2l3
Downstream geneEG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik, E530015N03Rik, Anks1b, LOC100043039, LOC544719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418D20.T7 (MSMg01no418_d20.b1)MSMg01-418D20.TJ (MSMg01no418_d20.g1)
ACCAG513624AG513625
length755788
length of high quality
(start - end)
564 (71 - 634)351 (73 - 423)
definitionCHROMAT_FILE: MSMg01no418_d20.b1 PHD_FILE: MSMg01no418_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:23 2005CHROMAT_FILE: MSMg01no418_d20.g1 PHD_FILE: MSMg01no418_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTGTAGTTTCCAAGATGGCTTTGAACTTGTCATCCTCCCGCCTCTG
CTTCTGAGTGCTTCTTTTCAACCTGTGAGTCATCTTGCTCGCTGACTGCT
TTGCTGGGAGCTAAATCCAGGACCTTTGGGTATGCTAAGCTATATCAAGC
TACAGGTGTTTGCTTTTTGCCTTGCCAGGGAAAATTGCTTAGCTGACTGA
GTTCAACTCACCACTTGCTTTAACTGGAGGACTAAGACAGCATGGTTGGC
TCACACATTCCAAGTGTAGCATGGGACTCTCAGTTTGCCACTCTTTCCCA
GCTACTCATCGTCTTATGTGAAATCATCACCCTTCCTCAAAATCACCTTC
ATCACCCTTCCTCCTTCCTCAAAATTCCAGCATGCCTCCTTCTTCTTAAC
TGATGACGTTGTTGGGAAAGGTGGCTTTTATAAGCACACGATGTACTCGG
GGTAAAGTGCTGACTATGTTATAGCACCATGGTCTCCAACCTCGGCTGAT
CTACTTCATCCCTTGGATGTTGGCAGCATCTAGAGATATTTCTGATTGCC
ACATTGCAGGGAGGGGACACTCCTTGCATCTGGTGGGCAGAAGCTATATC
ATTAGCAAACTAATTACATAGTTGCAGATTTCAGTCATGCCTAGATTTAA
GAACTCTGCTGTAGGGGGATGCTGAGCACTGAGGCCAATTAACTGCTCTG
TCTGG
ACGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCAGCCCTACTAGTGAAAGGAAATAAA
ACTTGAGACCTGTGATTCATGTAATGTATGTCAAATAGCCCAAAGAGTTG
TTTGTGAGCTTTGAATCCTGGGGCTGAGAACATAGCAGAACAGACCAGGA
CATTCCCCGGGCAGGCCCGTCGCCTCCCTATCTCCCACCCCTCTGACCTA
AGTTAAATGTTAACAGGCTGCTGATGTTTAAATGGACCAATCATGTGAAA
CCGTGCCAATTCCTCCCCCAGTCCCACTCCTTTTCTATAAAAACCCCTAG
CTTGCAAGCCTCGTGGTCGAATCCACTGTCTCCTGTGTGACTCGGAGCTC
CGCCATTAAAATACCTCGTGTTGTTACATCAAGGTGTTGTGTTCTGTTCG
TGATTTTTGGGTGCACGCTGAATCAGGAGTTGAGTGGGGTTTCCCCCTCA
AATTACTTTCTTATTACTTCTCCCACGCAATTTAGGCCTTTTGTTGCTCT
TCTCTTAAATTCCATCGCTGTTTTACTTCACTATTCATTGTCATACGTCA
GTATCACATTATATTTTTCTTTTCTGTCATTCCCCTTCCTTACCTTCTCT
TTATTCCACTAGTATCCTCTTCTTCTACCGCATTTTACCATCTCTATGCC
TCCCATAACATCATACATCCACACAGCCCGTTCTGAATTTAGTATTCTAT
CTTCTCTCCAGTCCTTATATTCTTATTACAATCACGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_d20.b1 MSMg01no418_d20.b1 CHROMAT_FILE:
MSMg01no418_d20.b1 PHD_FILE: MSMg01no418_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:23 2005
         (564 letters)



>mm_chr10_88930662_88931625
          Length = 964

 Score =  874 bits (452), Expect = 0.0
 Identities = 504/534 (94%), Gaps = 22/534 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctttgaacttgtcatcctcccgcctctgcttctgagtgcttcttttcaacctgtgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggctttgaacttgtcatcctcccgcctctgcttctgagtgcttcttttcaacctgtgagt 454

                                                                       
Query: 61  catcttgctcgctgactgctttgctgggagctaaatccaggacctttgggtatgctaagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 catcttgctcgctgactgctttgctgggagctaaatccaggacctttgggtatgctaagc 394

                                                                       
Query: 121 tatatcaagctacaggtgtttgctttttgccttgccagggaaaattgcttagctgactga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tatatcaagctacaggtgtttgctttttgccttgccagggaaaattgcttagctgactga 334

                                                                       
Query: 181 gttcaactcaccacttgctttaactggaggactaagacagcatggttggctcacacattc 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gttcaattcaccacttgctttaactggaggactaagacagcatggttggctcacacattc 274

                                                                       
Query: 241 caagtgtagcatgggactctcagtttgccactctttcccagctactcatcgtcttatgtg 300
           |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 273 caagtgcagcaggggactctcagtttgccactctttcccagctactcatcgtcttatgcg 214

                                                                       
Query: 301 aaatcatcaccct-tcctcaaaatcaccttcatcacccttcctccttcctcaaaattcca 359
           ||||||||||||| |             ||         |||||||||||||||||||||
Sbjct: 213 aaatcatcaccctgtg------------tt---------tcctccttcctcaaaattcca 175

                                                                       
Query: 360 gcatgcctccttcttcttaactgatgacgttgttgggaaaggtggcttttataagcacac 419
           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 174 gcatgcctccttcttcttaactaatgactttgttgggaaaggtggcttttataagcacac 115

                                                                       
Query: 420 gatgtactcggggtaaagtgctgactatgttatagcaccatggtctccaacctcggctga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 gatgtactcggggtaaagtgctgactatgttatagcaccatggtctccaacctcggctga 55

                                                                 
Query: 480 tctacttcatcccttggatgttggcagcatctagagatatttctgattgccaca 533
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 54  tctacttcatcccttggatgttggcagcatctagagatatttctgattgtcaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)