BAC Information

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BAC

Clone NameMSMg01-418K01
Chromosome10 (Build37)
Map Location 19,154,744 - 19,155,108
singlet/doubletsinglet
Overlap genenone
Upstream geneNhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3, Tpi-rs5, EG637620, Olig3
Downstream geneIfngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5, Mtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418K01.T7 (MSMg01no418_k01.b1)MSMg01-418K01.TJ (MSMg01no418_k01.g1)
ACCAG513918AG513919
length758831
length of high quality
(start - end)
381 (72 - 452)458 (163 - 620)
definitionCHROMAT_FILE: MSMg01no418_k01.b1 PHD_FILE: MSMg01no418_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:52 2005CHROMAT_FILE: MSMg01no418_k01.g1 PHD_FILE: MSMg01no418_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCTCACATACACTACAGATAAAGAGCCTCTGTGCACCTG
CCCTTTCCTTTAGTCTCATGATGCCCCTAAGCCTAGACCAACAACCAGGG
TCAGAGGAAAATGGGAAATCTGTTCTGAAGACTGCCAATTTTCTGTGCCC
TCTTCCTCTTCCTCCCAAAGGATTGTTTTCCTGTTAGATGTCAAATTGAT
GATTCTAAATCCCAGATGTGTCATGCTTAGGTTTCAAAGAACAGCCTCTC
AAATCGAGCAATAAATCTTCTTGTTTGGTGGCTGTTGTGTGGAGCTGCCG
TGCCCTGGCTCTTACATACCCACTAATTCTGCGCGATAAGTGAGGCTGGA
GGAAGCTCCGAGCTCTCTGGGGGCTGAGTTCAAGGTGCAAACATATTGAG
ACGCTATGATTGCTGAATCTGTCCTGCTTCTGAGATGCCTCGGCTCATGC
CTGTATATCCAAAGGCCATCTGCCTTGTTACCCCAGCTACTTGTGCTGGC
TCCATGCCTCTTTGGAATCTCTCTCCCTTTTCGAGATGTCTCCAAACTGT
CTGTGAGGTTCTTGTCTACCTCTTTCCTCGCTTCCCGTGTCCTTCGCTGT
CTTTTCCTTTCTTTTCACCCGTATCCTCTCATTGTCCGTTTTTTTTACGT
TTATTTGCACGCCTTCCTTTTTCTTTTTCTCCTTCCGGCCCTTATTCCCT
TTTTTTTG
GATGCNNAGGAGAGGAGAGGGGGGAGGGGAGAGGAAGGNAGGGGAGGAGG
GTAGGAGGAGGAGGGTTGGTGGGGGNNGGGGGGAGTGAGCTATGATAXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTATTATTACCCACACTTTGGGGTTGGCACATGTATTGG
CTAGTTTTGTGACAACTTGACACTGCTGGAGTTATCACAGAGAAAGGAGC
TTCAGTTGAGGAAATGCCTCCATGAGATCCAGCTGTAAGGCATTTTCTCA
ATTAGTGATCAAGTGGGGAGGGCCCCTTGTGGGTGGGACCATCTCTGGCC
TGGTAGTCTTGGTTTTATAAGAGACCAGGCTGAGCAAGCCAGGGAAACAA
GCCAGTAATGAACATCCCTCCATGGCTTCTGCATCAGCTCCTGCTTCCTG
ACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAACAGCAGTATGG
AAGTGTAAGCCAAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCACG
ATGTTTGTGCAGGAATAGAAACCCTGACTAAGACAAAGTGGTACCAGCAT
AGTGGGGTATTCCTGTGACAACCTGACCATGCTTTGGTAAGGACTGTGGA
AGGACTTTGGTCCATAACATTCATTCCGCGTTAACAATTCTGCTAGAAGC
TGCGCACGAGCTTGGAATATAATGATGATAACTGTGCCCAATATGTAGTC
TTGCCTTCGTTATTTTTCTAGGCTAAAACTAAAGACTCTTCTCCCGCTCC
TTGTTGCTTTTACCGCCAAATTTCCGTATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_k01.b1 MSMg01no418_k01.b1 CHROMAT_FILE:
MSMg01no418_k01.b1 PHD_FILE: MSMg01no418_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:52 2005
         (381 letters)



>mm_chr10_19154528_19155308
          Length = 781

 Score =  644 bits (333), Expect = 0.0
 Identities = 357/365 (97%)
 Strand = Plus / Minus

                                                                       
Query: 17  ctctgtgcacctgccctttcctttagtctcatgatgcccctaagcctagaccaacaacca 76
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctctgtgcacctgtcctttcctttagtctcatgatgcccctaagcctagaccaacaacca 522

                                                                       
Query: 77  gggtcagaggaaaatgggaaatctgttctgaagactgccaattttctgtgccctcttcct 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 521 gggtcagaggaaaatgggaaatctgttctgaagactgccaattttctgtgcccccttcct 462

                                                                       
Query: 137 cttcctcccaaaggattgttttcctgttagatgtcaaattgatgattctaaatcccagat 196
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 461 cttcctcccaaaggattgttttcctgttagatgtcaagttgatgattctaaatcccagat 402

                                                                       
Query: 197 gtgtcatgcttaggtttcaaagaacagcctctcaaatcgagcaataaatcttcttgtttg 256
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct: 401 gtgtcatgcttaggtttcaaagaacagcctctcaaatccagcaataaatcttcctgcttg 342

                                                                       
Query: 257 gtggctgttgtgtggagctgccgtgccctggctcttacatacccactaattctgcgcgat 316
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 341 gtggctgttgtgtggagctgccgtgccctggctctcacatacccactaattctgcgtgat 282

                                                                       
Query: 317 aagtgaggctggaggaagctccgagctctctgggggctgagttcaaggtgcaaacatatt 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aagtgaggctggaggaagctccgagctctctgggggctgagttcaaggtgcaaacatatt 222

                
Query: 377 gagac 381
           |||||
Sbjct: 221 gagac 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)