BAC Information

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BAC

Clone NameMSMg01-418K08
Chromosome10 (Build37)
Map Location 115,250,410 - 115,250,822
singlet/doubletsinglet
Overlap genenone
Upstream geneTph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073
Downstream geneTspan8, Ptprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2, LOC668080, EG668091, Gm239
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418K08.T7 (MSMg01no418_k08.b1)MSMg01-418K08.TJ (MSMg01no418_k08.g1)
ACCAG513932AG513933
length746803
length of high quality
(start - end)
413 (76 - 488)530 (134 - 663)
definitionCHROMAT_FILE: MSMg01no418_k08.b1 PHD_FILE: MSMg01no418_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:54 2005CHROMAT_FILE: MSMg01no418_k08.g1 PHD_FILE: MSMg01no418_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTCCTTTCACCTAATGAAATAGTTTACAGATAGTCAGAAATGGT
GATCAAAATGCTCAGCAAATGTAGTTGCTGCCATGCCATTTGTTACAAAA
ACAAACAGCCAAGCTGCCTAATTGAGCATCTACTTTGTATTCACTCTGCA
ACAAAGAGAGAAAGAAGGAAAGAATAAATCTGTTTTCAAAGAATGTATAC
TAAAATGATCACTTCCCCTTTATATTTATGTTTTCAAAAACCAGTAATAC
AAACAATAATTGTCAATGGAGTATGGTATTAAAAAAAAAACCCTAATGAC
ATATTTTAGAAAAAAAGGTTCTTTTCTCTGTTATCTTCTGCGTTCTTGGA
TATACTTGTATCACACTGTGAGTACTGAGTTCATGTCCTCAAAGGTTACG
AACAGTGGCAAGAAAGTGATGTTGCGGTGCTGTGAGGCTTATACTCACAA
GTGGGCGGTTAATGGAGTCAGCGCCCATCTTAAACTATTCAAATGAAAAC
GAAGTTCTCTGGTCTCCTTTGGGAGCTTCACCCCTGTCCTTTAGGGAAAG
CTAAAGGGTGGGACTCTCAACCACTTCATTGTGTGCTGATCTAACCCCTG
CCTGCCTAATATTCTCCTGCCCAGGCTTCCTTTCTTTTCACTCTAACAGC
CCGCCCACGAAAACCTTCCCTGCCTTACCCTGCTGAACGATAAATN
GGATGGNCCAGGAGCAGGAGGTAGGTGCTGAGGGGAGGAGGNNNNNGGGG
GACGAGAGCTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCAGTTGAATCCTTC
TCAACAGTCTGTTTTACGGGAACCTTTATTACCGTGACCCGCAGTTCTGG
TTCCGGAATGAGGGATCTTCCTTGCGCCGGTCCCGAGTTTTCTTGTATTT
TCTCGTCCCGGATTTCAGCACCAACTCTTATACGCGTTCTCACGACCGGC
CAGGAAAGACACAACAAACCAGAATCTTCTGCGGCAAAACTTTATTGCTT
ACATCTTCAGGAGCCAGGAGCGCAAGCCCCCAGCCCCAAAAACGAAAGCG
CCCCTCTAAACGAAAGCGAAACCCTGTCCCTTTAAGGAGAATTATCCTTC
GCCTAGGACGCATCACTCCCTGATTGGCTGCAGCCCATGGCCGAGTAAAG
GCAGAGTACATGTAGTGGTAAAATACCCTTGGCACATGCGCAGATTATTT
GTTTACCACTTAGAACACAGGATGTCAGCGCCATCTTGTGACGGCGAATG
TGGGGGGCGGCTCCCAACACTGTGCCTTAATTTCTGGTGGCTATTGTTAG
TGATTTCTGTCCCACGGTGGCTCTCCTATTGGAGCTGTTTTTCTATCTCA
GTGAGGGTTCCTCAAACCCTCAGTGTATCTTCTTTTTCACCAATAGTGCT
ATCCTGTATATAATTTCCCAAAGATTATGGCCTTGGGAGTCATGGGAAAG
AAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_k08.b1 MSMg01no418_k08.b1 CHROMAT_FILE:
MSMg01no418_k08.b1 PHD_FILE: MSMg01no418_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:54 2005
         (413 letters)



>mm_chr10_115250210_115251022
          Length = 813

 Score =  746 bits (386), Expect = 0.0
 Identities = 407/414 (98%), Gaps = 2/414 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtttacagatagtcagaaatggtgatcaaaatgctcagcaaatgtagttgctgccatg 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 613 tagtttacagatagtcagaaatgatgatcaaaatgctcagcaaatgtagttgctgccatg 554

                                                                       
Query: 61  ccatttgttacaaaaacaaacagccaagctgcctaattgagcatctactttgtattcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ccatttgttacaaaaacaaacagccaagctgcctaattgagcatctactttgtattcact 494

                                                                       
Query: 121 ctgcaacaaagagagaaagaaggaaagaataaatctgttttcaaagaatgtatactaaaa 180
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 493 ctgcaacaaagagagaaagaaggaaagaatagatctgttttcaaagaatgtatactaaga 434

                                                                       
Query: 181 tgatcacttcccctttatatttatgttttcaaaaaccagtaatacaaacaataattgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgatcacttcccctttatatttatgttttcaaaaaccagtaatacaaacaataattgtca 374

                                                                       
Query: 241 atggagtatggtatt-aaaaaaaaaaccctaatgacatattttagaaaaaaaggttcttt 299
           |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atggagta-ggtattaaaaaaaaaaaccctaatgacatattttagaaaaaaaggttcttt 315

                                                                       
Query: 300 tctctgttatcttctgcgttcttggatatacttgtatcacactgtgagtactgagttcat 359
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tctctgatatcttctgcgttcttggatatacttgtatcacactgtgagtactgagttcat 255

                                                                 
Query: 360 gtcctcaaaggttacgaacagtggcaagaaagtgatgttgcggtgctgtgaggc 413
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gtcctcaaaggttactaacagtggcaagaaagtgatgttgcggtgctgtgaggc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 813
Length adjustment: 9
Effective length of query: 404
Effective length of database: 804
Effective search space:   324816
Effective search space used:   324816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)