BAC Information

Click to search

BAC

Clone NameMSMg01-419K06
Chromosome10 (Build37)
Map Location 69,741,147 - 69,741,275
singlet/doubletsinglet
Overlap geneSlc16a9
Upstream geneRhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371, Ank3, LOC100039734, 5730416O20Rik, Ccdc6, 2310015B20Rik
Downstream geneLOC632955, 1200015N20Rik, LOC665398, Phyhipl, EG665429, Bicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419K06.T7 (MSMg01no419_k06.b1)MSMg01-419K06.TJ (MSMg01no419_k06.g1)
ACCAG514694AG514695
length765781
length of high quality
(start - end)
129 (191 - 319)149 (71 - 219)
definitionCHROMAT_FILE: MSMg01no419_k06.b1 PHD_FILE: MSMg01no419_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:15 2005CHROMAT_FILE: MSMg01no419_k06.g1 PHD_FILE: MSMg01no419_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCTTTAATATTTTTGGGCGCTAAAGAATCACTATTTCCACAACAACCG
CGGAANTCAGAACTTTCCCCACACCGGCANNGGANGACAAAAGGGCCAAA
AAAANGGGCCCCGGCCCCCTATAGAAAAGCCTGAAGCAATTGGTATTGAT
GAACTAATTAATGCACATGCGTGCCTCTTAATGGTCCAAGTCCCCTAAAC
ACCAATTATTTTTCCTGTCTGTAGCCGTGTAAGATCTAGACTTCGATGAA
AGCATAATTACTGTGTTCTCTCACTTTGCTCTTGTATGTTGACTATTTTT
CAATTAAGATGTTCCTGTATATTATTATTAATTAGAGCTTTGCATTTTCC
AAAACACGAGAAAACCCTGAGATCGGTTCCTGTGGCCACCAAAGAATTCC
CGCATCTTCTCTAAGTCACCACCGTGTTCTCATGAGATGCAGGCTGAGAT
ACCAAATTTGGCCTGCGCTGTCACACAGTATATTGTAGCAGTTAATAGTC
TTTGCTAGTATTTGACAATTCTTTTCTCACTTAAGACCAGAGCAGAAACT
TGGACCTTTTAACTTGTATTTCTTTACCTGCGGGGATGAAAAAGCCCGTG
TGCGATAGTGGGCAAGTGTTGAAGGGGTTTACCAAACCCCTCCCTCTGTT
TCTATTTCCCGTTTTTCTTTTTTTTTCTTTCCACCCCTTCTTCTCTTCCC
TTCCCCTCCTTTTTCTCCTATAACTAATAATAATTCCTGTAAAAATGTTT
CCCTTCTCACCCTTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACAGAGAAACGC
TGTATCAAAAAAATAAATAAATAAAATTAAAAAAAATTGAATGTCATCCT
TGTTTGTTTTGTTTCTTGAGTTTTGTTGTTTTTGTTTGTTTGTTTGTTTG
TTTGTTTTGCTTTGCTTTTGGCTTGCGTCACTTCAGTTCCTGTCCTCCCT
CTTTTCCCCTCATATCGCTAGTACCACTCACATGTACCATCATGCCTGTT
TCACGCACCCATATTTTTTTTTTTTTTAACCGAGGACGGCCCCCATGAAC
CCTATTCTTCTTCTCCCCCCTTTCTTCCCGGTCCTCCCCTGCTCACCGTT
TGTTCTCTTTCCCCCCCCCCCTCTCTCTTTCTTTTCCCACACTTCTTTCT
TCCTTCTTCTACTCCCCTCCCTCTCCCCCTTTCTTTCCCTCTCTCCCTTC
CCCTTTATCCCCCTTACCTCCTTCCCCCTTTCTCACCTCCTTCCCTTCTT
TTTTTCCCCTTTCTTCCTCCTTCTCCCCCTTTTACCCCCCTTTCTTATCC
CTCTCTCCCTTTCTTCCTTTCCCCCCTTTCTCACTTTCTCTCTCTCTTTT
TTCTCCTTCTTCCCCTCCCCTATTCCTTCCCTTACTTTTCTTTTCCTCCC
TCCCCTCTCCCTCCCGTTATATCCCCCCTTTCCATCTTTTATATCTACTT
TCTTCTTTTCCTCATTATTTTTCTCCTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_k06.b1 MSMg01no419_k06.b1 CHROMAT_FILE:
MSMg01no419_k06.b1 PHD_FILE: MSMg01no419_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:15 2005
         (129 letters)



>mm_chr10_69740947_69741475
          Length = 529

 Score =  234 bits (121), Expect = 1e-66
 Identities = 127/129 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcccctaaacaccaattatttttcctgtctgtagccgtgtaagatctagacttcgatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 201 tcccctaaacaccaattatttttcctgtctgtagccgtgtaagatctggactccgatgaa 260

                                                                       
Query: 61  agcataattactgtgttctctcactttgctcttgtatgttgactatttttcaattaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcataattactgtgttctctcactttgctcttgtatgttgactatttttcaattaagat 320

                    
Query: 121 gttcctgta 129
           |||||||||
Sbjct: 321 gttcctgta 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 129
Length of database: 529
Length adjustment: 8
Effective length of query: 121
Effective length of database: 521
Effective search space:    63041
Effective search space used:    63041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)