BAC Information

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BAC

Clone NameMSMg01-420B06
Chromosome10 (Build37)
Map Location 80,422,058 - 80,617,397
singlet/doubletdoublet
Overlap geneGng7, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4
Upstream geneWdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, LOC100042403
Downstream geneEef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420B06.T7 (MSMg01no420_b06.b1)MSMg01-420B06.TJ (MSMg01no420_b06.g1)
ACCAG515028AG515029
length721744
length of high quality
(start - end)		165 (87 - 251)492 (70 - 561)
definitionCHROMAT_FILE: MSMg01no420_b06.b1 PHD_FILE: MSMg01no420_b06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:48 2005CHROMAT_FILE: MSMg01no420_b06.g1 PHD_FILE: MSMg01no420_b06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,422,058 - 80,422,222)(80,616,906 - 80,617,397)
sequence
NNAAAACCTAAAATTGCGGGCGCTATANGAATCACAATTTTCAACAAACG
GCGGAANTCCCTCTCTTTCAAAAAAATTCAAATCGNGCCTTCTCTAGCCA
GAAAACAGGGGCTTTGAGTTGTAGCAACAGGTCCACGCTTGTCCTTCTGC
ACCTAAGACAGGAACCCCGCATCCATGACCTCTTTCTGAGGCATGTGGAC
TTTGAGGAAAATACCTGTAGATCATCATCTTGCACAACCTGGTCAGGTGA
TGATTTCAGGTCACCTGTTTGTGGACAGAGAATGAAAACATGTTCTGGAA
TGTGCTGGTGTTGTGAGCTTATTATGTTGAGATGTTCACAGCCAGAGCCA
TGGGGAAGATTTCTCAGCTGGAACAGTGCTTGTAGCTTAGTGGCAGGGTG
CTTGTAGCTTAGTGGGCAGCGGTTGTAGCTCAGTGGGCAGTGGTTGTAGC
TCAGTGAGCAGGTTGTAGTTCAATGGGCAGGGTGCTTGTAGCTCAGCGGG
TAGTGGTTGTAGCTCACCGGGCAAGGCGCTTGTATGTCAGTTGGCAGTGC
TTGTAGCTCAGTGGGCAGGGCGCTTGCTCAGCATGCTGAATCCCTGTGCT
CCATGTCCAGCATGTTGCATGGGCTTGCACACCTGTTACCCCAGTATTTG
TTATTTTTTTTCCAACAGATCGTTATTCCAAGGTTATCTTTGTCCACTTA
AGAAGTTGAGCGTACCCCTTG

TTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCCAGGCACACAGGGATGCCAGGCATAGTAC
ACCTTGTGCCTGGGCCCAGACCTGTGCACTCTGGTGCCTACAGGCTGCTG
TCGAAGATCCTGAGTGAGTGTGAGGGCGCGGATGAGATTGAGTTCCTGGC
GGAAGGCTCATGGCGTCCAATCCGTGCAGAGAAGGAGCCAAGCTGCAGCC
CACAGGGCCCCATCCTGGTGCTAGGTGAGTCCTGCACACAGCACCCACCA
CACCAGCCAGCCAGGCCGGTGGCTGAGCACTGTTGCCCTGTCCCCACAGG
CACCTCGGACGCCAATGGGCTCGCACCAGCCTCCAGCACCCCCGGTATAG
GCAGTGGCCTGAGTGGCCCAGGCAGCGCCGGCAGCGGTGCAGGGGCAGCA
GGCAGCCTGGAGAATGGCAAGACGGGAGCCGACGTGGTGGACCTCACACT
GGACAGCTCGTCGTCCTCGGAAGATGAAGATGAGGACGAGGACGACGATG
AGGACGAGGACGAGGGCCCCCGGCCGAAGCGCCGCTGCCCGTTCCAGAAA
GGCCTGGTGCCCGCGTGCTGACTCCGCTGCGGTGCCGCTGGATGGTGGTA
TCCGTACCCGTCCATTATTCCCTCGGCCATCCCTTCCCGATTTCCGGTTC
CTGTACCTTTGGATTCCCCTCTTGGGGGGGATTATTAAATGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_b06.b1 MSMg01no420_b06.b1 CHROMAT_FILE:
MSMg01no420_b06.b1 PHD_FILE: MSMg01no420_b06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:48 2005
         (165 letters)



>mm_chr10_80421858_80422422
          Length = 565

 Score =  281 bits (145), Expect = 2e-80
 Identities = 160/165 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccttctctagccagaaaacaggggctttgagttgtagcaacaggtccacgcttgtcctt 60
           |||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 201 gccttctctaaccagaaaacagtggctttgagttggagcaacaggtccacgcttgtcctt 260

                                                                       
Query: 61  ctgcacctaagacaggaaccccgcatccatgacctctttctgaggcatgtggactttgag 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgcacccaagacaggaaccccgcatccatgacctctttctgaggcatgtggactttgag 320

                                                        
Query: 121 gaaaatacctgtagatcatcatcttgcacaacctggtcaggtgat 165
           ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 gaaaatacctgtagatcatcaccttgcacaacctggtcaggtgat 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no420_b06.g1 MSMg01no420_b06.g1 CHROMAT_FILE:
MSMg01no420_b06.g1 PHD_FILE: MSMg01no420_b06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:48 2005
         (492 letters)



>mm_chr10_80616706_80617597
          Length = 892

 Score =  936 bits (484), Expect = 0.0
 Identities = 490/492 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tccaggcacacagggatgccaggcatagtacaccttgtgcctgggcccagacctgtgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tccaggcacacagggatgccaggcatagtacaccttgtgcctgggcccagacctgtgcac 633

                                                                       
Query: 61  tctggtgcctacaggctgctgtcgaagatcctgagtgagtgtgagggcgcggatgagatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tctggtgcctacaggctgctgtcgaagatcctgagtgagtgtgagggcgcggatgagatt 573

                                                                       
Query: 121 gagttcctggcggaaggctcatggcgtccaatccgtgcagagaaggagccaagctgcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 gagttcctggcggaaggctcatggcgtccaatccgtgcagagaaggagccaagctgcagc 513

                                                                       
Query: 181 ccacagggccccatcctggtgctaggtgagtcctgcacacagcacccaccacaccagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 512 ccacagggccccatcctggtgctaggtgagtcctgcacacagcacccgccacaccagcca 453

                                                                       
Query: 241 gccaggccggtggctgagcactgttgccctgtccccacaggcacctcggacgccaatggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gccaggccggtggctgagcactgttgccctgtccccacaggcacctcggacgccaatggg 393

                                                                       
Query: 301 ctcgcaccagcctccagcacccccggtataggcagtggcctgagtggcccaggcagcgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctcgcaccagcctccagcacccccggtataggcagtggcctgagtggcccaggcagcgcc 333

                                                                       
Query: 361 ggcagcggtgcaggggcagcaggcagcctggagaatggcaagacgggagccgacgtggtg 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ggcagcggtgcgggggcagcaggcagcctggagaatggcaagacgggagccgacgtggtg 273

                                                                       
Query: 421 gacctcacactggacagctcgtcgtcctcggaagatgaagatgaggacgaggacgacgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gacctcacactggacagctcgtcgtcctcggaagatgaagatgaggacgaggacgacgat 213

                       
Query: 481 gaggacgaggac 492
           ||||||||||||
Sbjct: 212 gaggacgaggac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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