BAC Information

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BAC

Clone NameMSMg01-420E09
Chromosome10 (Build37)
Map Location 67,248,806 - 67,249,089
singlet/doubletsinglet
Overlap genenone
Upstream geneReep3, Jmjd1c, Nrbf2, Egr2, Gm237, LOC100040081
Downstream geneLOC100039618, Zfp365, Plekhk1, Arid5b, LOC100040136, 1700040L02Rik, EG665342, Tmem26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420E09.T7 (MSMg01no420_e09.b1)MSMg01-420E09.TJ (MSMg01no420_e09.g1)
ACCAG515178AG515179
length1,024733
length of high quality
(start - end)
---284 (321 - 604)
definitionCHROMAT_FILE: MSMg01no420_e09.b1 PHD_FILE: MSMg01no420_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:04 2005CHROMAT_FILE: MSMg01no420_e09.g1 PHD_FILE: MSMg01no420_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTAATTTTTTTACTCGTCCAATAACGCCCCGGCGGGCGGCAACCCTA
AAATTGCGGCCGCGAAANGAANCACCCATTCCGCACCCGCGNGGAANNNC
AGGAGATACCANACACCAGGGAGAANGNGCNCNCAGAGAAGAAGCCAGAG
GGCAGGGANCNTTTTCCCCCAAGGAAGGAGGCGCCCAAGCGAAGGNAAAC
AACNANCNAAGAGCACCGGAACCCAGGCANCCANCAGGGAGNCCCACAGG
GCTANCAGACGGCTGCGCACGCCCGAGCGAGCGAGCGCGAGCGCGCGTGC
GCGCGCGCGCGAGCGCGCGCGCGCGCGCGCGCGCGCGCAGAGCCCAACCC
CCGGCCGGAGGCCCCTTTTTTTTTTTCCGCCCAGGCAGACGGGCGTGGTC
CTGACCCATTTCTATTCACCTCTCCCCCTCTTTGCCGAGCGAGGGCGTTC
CTTCGCATGGTTCGCTCCGCAACCTTCATACTCCCATTTTGACTTTATTC
TTCAGTCAGCCTGTATCTTTACAACATATAGGCAGTATTTATGTCAACAT
AGTTTGCCTCATGGATCTCTTCGCCTCTCTTCGTCCCCTGCCTCCCTCTC
TATCTCCTCTCCGCTTCCCTTTATAATTACTGACACAGTTATACGTGTCG
TCGAATCCCAAATCTGTATATCCCGCACCTCCGCACTATTAGCTATTCTT
GTAGCGCCATATTCCTTCATCATGTGTAGACTAACGTATTGCTACTCATC
ATTCTCGCATAACACCGGACGAACGATGTCGATATTATGCGTATATGCGC
CACTCGTCTTGCGCTTGAATTGTCGTTCTTTATTATCCACGTTCCCGCAA
CTTGTCATCTATGGGACTGTGTATTGTAGACGCGTGTGATCCGAGCGTAA
GTGACCTCTGCTCGGCCCCCTCTCTGTTCTTTGCGCGTCCTCTATGTTGT
ATCCCCCATCACACGAGTCGAGGCAGTCAATGATCCACCTCTTAATAGTA
TTACCCCCACATCTACTCTTACTT
TGTGTGAGGCCTGGGGGNCGCCTGTTTTCACACCTGAGGTGAACTATAGA
AGGTAACGAAAAATTCCTATGGAGTCAACAGTGATCTTCTCACTGGGTCT
ACAGCACTTGGTGACCCACTGTCCTCTGTATGAAGAAAAATCTGGTGTCA
CTTTCTTAATGCCAATAGAACCACTCGCACTTGGAGTTTCCTCTAGTTCC
ACCATTGCCCCCATCTCTTATAGCTGCTATACTCAAGGCAGAATTTTTCA
TTGGGAAGCAAGTTGGACAGAAGATATGCCACACAGCTGCCCTTCATGAC
TTGGCAGATGTGAGTAGATAAACGAGTTTATCTTCTAGTGTCTGCCTGGA
TCGCTCTCTAATTCTGTTGATAGGTACCTCTGCCTCATAGCTCTGTGCTG
TTCAGAAACACTCTACTCCCTGCTCTTTACTGGAATCTTAAGCTTCCCTG
TTAGATTTTAGTTGGCAGGATCTTCACCAAGTGGCTAACCAATAGCCAGG
TCATAAGGATTCTTTGCTCACAAGTAGACTCGCCATCCTGGGAGTGGATT
CGTTAGCATGACAGTGGGTTTGTTAAGAACCAGGCTTAGTTCTCCTCCTC
TCTTAGGTGTGTCCTCTCATGATGTATTGCATCCTGCAATGCTTTAAAAG
CTTATTGACCTAGCTTGAAGGGACACTTTCAGTCGTGTATGTCTCGGACT
CCGGGAGCTCTGAACCCAGTGCTGTTCTCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_e09.g1 MSMg01no420_e09.g1 CHROMAT_FILE:
MSMg01no420_e09.g1 PHD_FILE: MSMg01no420_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:04 2005
         (284 letters)



>mm_chr10_67248606_67249289
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacgagtttatcttctagtgtctgcctggatcgctctctaattctgttgataggtacctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aacgagtttatcttctagtgtctgcctggatcgctctctaattctgttgataggtacctc 425

                                                                       
Query: 61  tgcctcatagctctgtgctgttcagaaacactctactccctgctctttactggaatctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgcctcatagctctgtgctgttcagaaacactctactccctgctctttactggaatctta 365

                                                                       
Query: 121 agcttccctgttagattttagttggcaggatcttcaccaagtggctaaccaatagccagg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 364 agcttccctgttagattttagttggcaggatcttcaccaagtggctaaccgatagccagg 305

                                                                       
Query: 181 tcataaggattctttgctcacaagtagactcgccatcctgggagtggattcgttagcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tcataaggattctttgctcacaagtagactcgccatcctgggagtggattcgttagcatg 245

                                                       
Query: 241 acagtgggtttgttaagaaccaggcttagttctcctcctctctt 284
           ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 244 acagtgggtttgttacgaaccaggcttagttctcctcctctctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)