BAC Information

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BAC

Clone NameMSMg01-420N21
Chromosome10 (Build37)
Map Location 91,644,209 - 91,644,676
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041769, LOC100041799
Downstream geneLOC667203, LOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420N21.T7 (MSMg01no420_n21.b1)MSMg01-420N21.TJ (MSMg01no420_n21.g1)
ACCAG515630AG515631
length1,069768
length of high quality
(start - end)		---498 (64 - 561)
definitionCHROMAT_FILE: MSMg01no420_n21.b1 PHD_FILE: MSMg01no420_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:50 2005CHROMAT_FILE: MSMg01no420_n21.g1 PHD_FILE: MSMg01no420_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATTATAGCGAAACCCCGTTTATGTAGTTATGATCCGCCTATCTTTTTTC
TTTATTTTCTCTCCAGGTAGGTGCCTCCGCTACTTACCACTTTTTTTTTT
CTCCACTAAAGTCATTTTCCGCCCCGTGATAGCTATAATTGGATTCGGCC
CGCGTAACCGTATTACCGCCGATTTGGGAAATGCGCAGACTACTACCCGT
TCCCCGATATAATTGCCGTCGCGGTGCCTCGATAAGACAAATCGGGTGAA
TAAAGCCCGCTTATCGTATACCGCCACGTTTTTCGTAATCCATTATCCCG
CGACAACGCCGGCGAAACATCCGGAAACATGAAAAAATCATTAGGCAAGG
CTTATTGCCGCCCGTGTGCACACCGGAGGAGCCCCCGGTTGTCCTATTTT
ATAGTTGCGGCGCCCGTTTCACACTCCCCTCTCTGGATATCTTATTCACC
TCGTATTTTGCTTGTGCCCGGTTATTTACTTCGACCCCAGCGGCGGGTTT
TTTACCCTTTTGCCCCCCCCCCCTCCCCTTTATCCTTTCCGGGGTGGGGC
CTGCGCGGGTGAAGACTCCGCTATTGGGTGCCCTCTAAAAAATAGACGAG
CACGGTATATAGCTGACCCGTTTTTTTGCGGCGTTTNCGCGGTTTTTGTC
TAACGGCTATACGCCATATCCTTCTCCATCTGTCTGATTTTAATTTTCAC
TTATGTGTTGCCGTTTATAAATTATACACCGGGCACCTACTTATTCTTGG
TCCCTCGCGCCGGTATACGCCGCGCGCCACGTTGTTCTAATCGCCGCGTT
TATATGTCTCTTAATTTATATACGCCCCCGCTGTTTTTTCCCCGCTAATC
TATCTGTATTGCTGATCAAAACTAACCCCCCCGGCATACNCCATATAGGG
TGAACACCACNNTCCCACACACAATATTGGAACTCGACAAAGCGCCCTCT
CAATTATACTACCGCAATCCCTCGTGATTATAATGCAACGATACACATCC
ACGACAAACGCGGATGACGATCTCCAGGTATATTTTGACAAACGACAAGG
CGCGAGCGCGATATTAATA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXAGTGTTTAATTTTGACATGTCTTTTCTATTCATAATA
AAATCAATAAAACAAGTAGGGACATAGTACAAATGGCCTGTCTATACTCA
ATGACCCTGCTTAGTCTCTCAGTTTATTAGTCAAAAAATATTTGTTGCTA
CATAAGATGACCACATGGTTAGAGGACCACTGGAAATGCATGAAATTCAA
GGAGTCCACAGCTTGCTCCATTTTGCTTGGGACTCTATGTATGATTGGAA
GTGATTAGAAGACTTTGACTAAAAGCCCTACTGTAAGTCAGGAATCTATA
AAGGAACAGAACTGATAGAATATATAACATAATATACAATATATAATTGT
ACATTTTATGTATAGTATTATATATATAATTTATAATTATATAAATATAT
CATATATCATACAGCATAAGCATATATCATATCATATATCACACATATTA
TATGTCACATATCACATACATGTCATACCACATATATCAGATATGTCATA
TGTCATATATCAAATATCACATATTATATACATTATATAATTCTATATTA
TTTGNAAATATATAATATAAGTATGTATTATATAACATATATAATATTTG
ATATGTAAAATATGGGATATGAAGTATATCCCCATTATTCTAAGGCCGGG
ATTTTTGAATAAAAAGGTAAACANAAACTCCAATTTAAATACGCATTTTT
TTTTATTTCCTTCCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_n21.g1 MSMg01no420_n21.g1 CHROMAT_FILE:
MSMg01no420_n21.g1 PHD_FILE: MSMg01no420_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:50 2005
         (498 letters)



>mm_chr10_91644209_91645106
          Length = 898

 Score =  905 bits (468), Expect = 0.0
 Identities = 468/468 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgtttaattttgacatgtcttttctattcataataaaatcaataaaacaagtagggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 agtgtttaattttgacatgtcttttctattcataataaaatcaataaaacaagtagggac 409

                                                                       
Query: 61  atagtacaaatggcctgtctatactcaatgaccctgcttagtctctcagtttattagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atagtacaaatggcctgtctatactcaatgaccctgcttagtctctcagtttattagtca 349

                                                                       
Query: 121 aaaaatatttgttgctacataagatgaccacatggttagaggaccactggaaatgcatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aaaaatatttgttgctacataagatgaccacatggttagaggaccactggaaatgcatga 289

                                                                       
Query: 181 aattcaaggagtccacagcttgctccattttgcttgggactctatgtatgattggaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aattcaaggagtccacagcttgctccattttgcttgggactctatgtatgattggaagtg 229

                                                                       
Query: 241 attagaagactttgactaaaagccctactgtaagtcaggaatctataaaggaacagaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 attagaagactttgactaaaagccctactgtaagtcaggaatctataaaggaacagaact 169

                                                                       
Query: 301 gatagaatatataacataatatacaatatataattgtacattttatgtatagtattatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gatagaatatataacataatatacaatatataattgtacattttatgtatagtattatat 109

                                                                       
Query: 361 atataatttataattatataaatatatcatatatcatacagcataagcatatatcatatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 atataatttataattatataaatatatcatatatcatacagcataagcatatatcatatc 49

                                                           
Query: 421 atatatcacacatattatatgtcacatatcacatacatgtcataccac 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  atatatcacacatattatatgtcacatatcacatacatgtcataccac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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