Query= MSMg01no421_h21.b1 MSMg01no421_h21.b1 CHROMAT_FILE:
MSMg01no421_h21.b1 PHD_FILE: MSMg01no421_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:41 2005
(517 letters)
>mm_chr10_22296545_22297462
Length = 918
Score = 760 bits (393), Expect = 0.0
Identities = 492/531 (92%), Gaps = 16/531 (3%)
Strand = Plus / Plus
Query: 2 gccacccgttctagttggtcccagaccttacatggttctgtgctcctctccccaaagcct 61
|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 gccaccggttctagttgcccccagaccttacatggttctgtgctcctctccccaaagcct 248
Query: 62 gactgaaaaacctactcactatcttgtctccttctgggacccggaaaatcccacctcttt 121
||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 249 gactgaaaagcccactcactatcttgtctccttctgggacctggaaaatcccacctcttt 308
Query: 122 atttttgcccaatgattaccttctgccatctttattgacataatcaagaaacaattaggg 181
||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 309 attttcacccagtgattaccttctgccatctttattgatataatcaagaaacaattaggg 368
Query: 182 aaccagatttcagtatcagcccctcccactacatttctccagcccccacaattaatcatt 241
|||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||
Sbjct: 369 aaccagatttcagtatcagctcctcctactacatttctccagccctcacaattaatcatt 428
Query: 242 ttggctgggaagtagttcacttgcctgccatgtgtaagggctctgatggc-a-cct-aac 298
||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| |||
Sbjct: 429 ttggctgggaagtagttcacttgcctgccctgtgtaagggctctgatggtgatccttaac 488
Query: 299 acgcaggtgc--------atg---agcacacacacacacacacacacacacacactttta 347
||||||| || | | | ||||||||||||||||||||||||||||||||||
Sbjct: 489 acgcaggcgcgcgcgcgcacgcaca-cacacacacacacacacacacacacacactttta 547
Query: 348 atccttaaaatgaatctcattcacattacatattttgcatactctgggcagggatgtttg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atccttaaaatgaatctcattcacattacatattttgcatactctgggcagggatgtttg 607
Query: 408 cccttgtgttacctgggatagaaatccaaggagcatagctgatcccacttttcaa-ttct 466
||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||
Sbjct: 608 cccttgtgttacctgggataggaatccaaggagtgtaactgatcccacttttcaaattct 667
Query: 467 tgttctcatagaataataatgaatttaactaaataagtgtatgatttgtat 517
|||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 668 tgttctcatagaataataataaatttaactaagtaagtgtatgatttgtat 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 918
Length adjustment: 10
Effective length of query: 507
Effective length of database: 908
Effective search space: 460356
Effective search space used: 460356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_h21.g1 MSMg01no421_h21.g1 CHROMAT_FILE:
MSMg01no421_h21.g1 PHD_FILE: MSMg01no421_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:41 2005
(437 letters)
>mm_chr10_22441863_22442699
Length = 837
Score = 743 bits (384), Expect = 0.0
Identities = 393/396 (99%)
Strand = Plus / Minus
Query: 1 tagtagttgtttgatattggagacagcaaacagaaaagttgtagtaggagagctcttgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tagtagttgtttgatattggagacagcaaacagaaaagttgtagtaggagagctcttgcc 337
Query: 61 gtaatgatgtgcaagaaagcttaaaaataattcttgctttggacacagaaaataaagcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtaatgatgtgcaagaaagcttaaaaataattcttgctttggacacagaaaataaagcta 277
Query: 121 catttgaagttagctgagtatcagagggaaagtgatagatgaaggagggttctgaagctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 catttgaagttagctgagtatcagagggaaagtgatagatgaaggagggttctgaagctt 217
Query: 181 tgtggagaggggtggcataggtctcacttgagcccaggctaacctggagctctctaggta 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 tgtggagaggggtggcgtaggtctcacttgagcccaggctaacctggagctctctaggta 157
Query: 241 gctcaagctagccttaaaccaacgagagtcctcacccccagcctctagcgtgctggggtg 300
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 156 gctcaagctagccttaaaccaaccagagtcctcacccccagcctccagcgtgctggggtg 97
Query: 301 ccatacatgagtgagattgacatgtacatacatgtctaagattgagagatttggggatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 ccatacatgagtgagattgacatgtacatacatgtctaagattgagagatttggggatgt 37
Query: 361 catgagtgactccactccattcacttgacagtagta 396
||||||||||||||||||||||||||||||||||||
Sbjct: 36 catgagtgactccactccattcacttgacagtagta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
