Query= MSMg01no421_k12.b1 MSMg01no421_k12.b1 CHROMAT_FILE:
MSMg01no421_k12.b1 PHD_FILE: MSMg01no421_k12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:54 2005
(565 letters)
>mm_chr10_21303397_21304362
Length = 966
Score = 1036 bits (536), Expect = 0.0
Identities = 558/566 (98%), Gaps = 3/566 (0%)
Strand = Plus / Minus
Query: 1 aagtac-atgtgttgtttgccaagaacaactgtagtaagtggatattatatggatatcaa 59
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 aagtacaatgtgttgtttgccaagaacaactgtagtaagtggatattatatggatatcaa 588
Query: 60 caaagttattaaaactttgaatcattccaccacgctttaatgcattagaagggaagttaa 119
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 587 caaagttattaaaactttgaatcattccaccatgctttaatgcattagaagggcagttaa 528
Query: 120 agtaaacgcttgatcagcgtgttttaaagatggaaaggcccagagtggaacgggaaactt 179
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 527 agcaaacgcttgatcagcgtgttttaaagatggaaaggcccagagtgggacgggaaactt 468
Query: 180 ccaggctagatttcattcttggcagaatttcatctggctattggatgcttttctaaaatt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 ccaggctagatttcattcttggcagaatttcatctggctattggatgcttttctaaaatt 408
Query: 240 aagtgttccttgtttccatcctcaattatttggatgaatcacattctagagaaaacaagt 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aagtgttccttgcttccatcctcaattatttggatgaatcacattctagagaaaacaagt 348
Query: 300 gtgtcatctcagtgtctgtcttccaggtgctgtgggacatgtcacccacaacagcaaaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 gtgtcatctcagtgtctgtcttccaggtgctgtgggacatgtcacccacaacagcaaaca 288
Query: 360 catctttactctcataggaggcacgcactaaagccaatgtaagtccaagttctgattttc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 catctttactctcataggaggcacgcactaaagccaatgtaagtccaagttctgattttc 228
Query: 420 tcctcagcatcatatatgttatgcatgggacaagcaggctaagctttctgagcctccatc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 tcctcagcatcatatatgttatgcatgggacaagcaggctaagctttctgagcctccatc 168
Query: 480 tcctcatccacaaataagggaataatagtacttattggcgatgccaaataagacatggtg 539
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 167 tcctcatccacaaataagggaataatagtact--ttggcgatgccaaataagacatggtg 110
Query: 540 tgtcatccgttccaccatctgtagac 565
||||||||||||||||||||||||||
Sbjct: 109 tgtcatccgttccaccatctgtagac 84
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 966
Length adjustment: 10
Effective length of query: 555
Effective length of database: 956
Effective search space: 530580
Effective search space used: 530580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_k12.g1 MSMg01no421_k12.g1 CHROMAT_FILE:
MSMg01no421_k12.g1 PHD_FILE: MSMg01no421_k12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:55 2005
(462 letters)
>mm_chr10_21147370_21148233
Length = 864
Score = 779 bits (403), Expect = 0.0
Identities = 445/461 (96%), Gaps = 5/461 (1%)
Strand = Plus / Plus
Query: 1 ataagctctaggttcagaaagagatcctgtctcaaaaagacaaggtatagagcaactgaa 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 201 ataagctctaggttcagaaagagatcctgtctcaaaaagacaaggtagagagcaattgaa 260
Query: 61 gaaaacgtgtaacattgacctctgacctccccatagatgcccacacgcatacgtacacac 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaatatgtaacattgacctctgacctccccatagatgcccacacgcatacgtacacac 320
Query: 121 atgatcatatgacctaatcatataacctaacctaacacacacacacacacac--cccagt 178
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 atgatcatatgacctaaccatataacctaacctaacacacacacacacacacaccccagt 380
Query: 179 caattattttgttttcaacagctcaaaagttacaatttacctaaaccctttggtatgtgt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caattattttgttttcaacagctcaaaagttacaatttacctaaaccctttggtatgtgt 440
Query: 239 gtgtgtgtaactgtttttgcacagactggaaagtggctttagggaatgcctgaactgaat 298
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgtgtaactggggttgcacagactggaaagtggctttagggaatgcctgaactgaat 500
Query: 299 ccctaggagaaggaagtcggcgatagcagtcaggaccagagaattccaggtaaacgcagt 358
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctctaggagaaggaagtcggcgatagcagtcaggaccagagaattccaggtaaacgcagt 560
Query: 359 gatgattctggtgccctggaggtgacagggctctggccatttgcaggtaaaccgggtgac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatgattctggtgccctggaggtgacagggctctggccatttgcaggtaaaccgggtgac 620
Query: 419 tgaagcatcacagaggggaggagtatctgaggtagggagga 459
||||||||||||||||||||| || ||||||| ||||||
Sbjct: 621 tgaagcatcacagaggggaggggtgtctgagg---ggagga 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 864
Length adjustment: 10
Effective length of query: 452
Effective length of database: 854
Effective search space: 386008
Effective search space used: 386008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
