Query= MSMg01no422_j02.b1 MSMg01no422_j02.b1 CHROMAT_FILE:
MSMg01no422_j02.b1 PHD_FILE: MSMg01no422_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:02 2005
(583 letters)
>mm_chr10_88006908_88007891
Length = 984
Score = 1067 bits (552), Expect = 0.0
Identities = 570/576 (98%), Gaps = 1/576 (0%)
Strand = Plus / Plus
Query: 9 tctatgacaccttttctctataactttctctctacctagtgttgggggttggcagggctt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 tctatgacaccttttctctataactttctctctacctagtgttgggggttggcagggctt 268
Query: 69 agggtgcagtaaggattggaaggaagaatcccataaagtggccctaaaaatcatgcctac 128
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 269 agggtgcagtaaggattggaagggagaatcccataaagtggccctaaaaatcatgcctac 328
Query: 129 ataaataaaggggaaagctcagtgaaaatcaacaaacaatatctacaagtccttgaaaac 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ataaataaaggggaaagctcagtgaaaatcaacaaacaatatctacaagtccttgaaaac 388
Query: 189 tgtcacattaaaggacacattccacatgcaaccagacacccctgttctttactctgaaag 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgtcacattaaaggacacattccacatgcaaccagacacccctgttctttactctgaaag 448
Query: 249 tagtgcgaagaaattatcacctagatcttagacataggttttttttttttt-aattacaa 307
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 449 tagtgcaaagaaattatcacctagatcttagacataggttttttttttttttaattacaa 508
Query: 308 aattaacttccagcagagggaagccaaggactaattattgtcaattttatatcaaataga 367
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 509 aattaacttccagcagagggaaaccaaggactaattattgtcaattttatatcaaataga 568
Query: 368 agattcaagatgttgattggagaaattcaactcagaattggcaagacactatgttaatgt 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agattcaagatgttgattggagaaattcaactcagaattggcaagacactatgttaatgt 628
Query: 428 atagttttaagcttttgataaagtgactaatttggggtcactttgaaatagtggttcctc 487
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 629 atagttttaagcttttgataaagtgactaatttggggtcactttaaaataatggttcctc 688
Query: 488 aaggaaatctgaagtgagaagaggggtccaggagaatctggaacactaatagtcaggtag 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aaggaaatctgaagtgagaagaggggtccaggagaatctggaacactaatagtcaggtag 748
Query: 548 actcaagtcactgggttttagctgagctaaaatgca 583
||||||||||||||||||||||||||||||||||||
Sbjct: 749 actcaagtcactgggttttagctgagctaaaatgca 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 984
Length adjustment: 10
Effective length of query: 573
Effective length of database: 974
Effective search space: 558102
Effective search space used: 558102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_j02.g1 MSMg01no422_j02.g1 CHROMAT_FILE:
MSMg01no422_j02.g1 PHD_FILE: MSMg01no422_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:02 2005
(427 letters)
>mm_chr10_88172167_88172996
Length = 830
Score = 700 bits (362), Expect = 0.0
Identities = 404/422 (95%), Gaps = 11/422 (2%)
Strand = Plus / Minus
Query: 1 caggacagccaggactacacagagaaaccctgtctcgaaaaaccnnaaaaaaaaaaaaaa 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 463 caggacagccaggactacacagagaaaccctgtctcgaaaaacc------aaaaaaaaaa 410
Query: 61 aaaaaaaaaaaaaaaaccatttaa-ccccccccaaaaaaaccaaaaaaccaaat--cccc 117
||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||
Sbjct: 409 aaaaaaaaaaaaaaaaccaattaacccccccccaaaaaaaccaaaaaaccaaatcccccc 350
Query: 118 ccccaaaaaaaaagaaaaagaaaaagaaccaacttaaatgaatattgttaggcttaaaaa 177
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 cccccaaaaaaaagaaaaagaaaaagaaccaacttaaatgaatattgttaggcttaaaaa 290
Query: 178 gtaagcctggccaggtgtggtggtgaatgcctttaatctcaacactgaagaggcagagca 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 gtaagcctggccaggtgtggtggtgaatgcctttaatctcaacactgaagaggcagagca 230
Query: 238 attgaggatctctgtggatttgaggccagcctggtctagtgagtgagttctaggacagca 297
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 229 attgaggatctctgtggatttgaggccagcctggtctagagagtgagttctaggacagca 170
Query: 298 gggctacacagagagacctc-atcttaagag-aaaaaaaaaatgaagacaaagaaacaaa 355
|||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||
Sbjct: 169 gggctacacagagagacctcaatcttaagagaaaaaaaaaaatgaatacaaagaaacaaa 110
Query: 356 aagagtaagtgatggttgcctataagagtcagaatgaggcagatgggagacgacaacttt 415
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 109 aagagtaagtgatggttgcctataagagtcagaatgaggcagatcagaaacgacaacttt 50
Query: 416 tg 417
||
Sbjct: 49 tg 48
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 830
Length adjustment: 9
Effective length of query: 418
Effective length of database: 821
Effective search space: 343178
Effective search space used: 343178
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
