BAC Information

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BAC

Clone NameMSMg01-422K19
Chromosome10 (Build37)
Map Location 51,007,927 - 51,008,454
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC629652, Ascc3, Sim1, LOC268300
Downstream geneLOC100041768, Gp49a, Lilrb4, LOC669246, 9430073N08Rik, Gprc6a, Rfxdc1, 4933411G06Rik, Vgll2, Ros1, Dcbld1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422K19.T7 (MSMg01no422_k19.b1)MSMg01-422K19.TJ (MSMg01no422_k19.g1)
ACCAG517008AG517009
length725736
length of high quality
(start - end)
555 (44 - 598)566 (66 - 631)
definitionCHROMAT_FILE: MSMg01no422_k19.b1 PHD_FILE: MSMg01no422_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:10 2005CHROMAT_FILE: MSMg01no422_k19.g1 PHD_FILE: MSMg01no422_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCCCC
TGTACTGGCGCATATACAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGT
GATGGCCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGC
TCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGA
TCCTTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTA
TGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGC
CCCGGCATAGTCTCTTTTTAGACAGCTACATCTGGGTCCTTTCAATAGAA
TCTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGT
GGATCCCTGGATATGGCAGTCTCTACATGGTCCATCCTTTCATCTCAGCT
CCAAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAAATCT
AAGGAGGGGCATAGTGTCCACACTTCAGTCTTCATTCTTCTTGAGTTTCA
TGTGTTTAGCAAATTATATCTTATATCTTGGATATCCTAGGTTTGGGGCT
AATATCCACTTATCAGCGAATACATATTGGGGCGAGGTTCTTTGTGAATG
TGTTACCTCTCTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCCAGGA
ATTCCATAATTTCATTCCTTTTTAG
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGTGCATCAGAGCTCCTGCTAACACACACAAGATG
TAGGGCAGGTCTCTGGATCAGGAATTTTGAATACTAAGCAGCAATGAATG
CATGAAATAAATCAAATGGGAGAATAGTGAAAATGCTTCATGCTTACTCT
TCAGCAAGCCAGATTTAAAAAGGGAGCCTGGCTCCCCTCAACTATTTCTG
TGTGTAATTTTTTTTTAGGAATTATAACTTTTTAAAAATATTAAGAAAAT
ATACACAAAGAGAGTGCTGGAGGAAAGAAGAGAGCCTCCTTTTCTTGAGT
CTCTCTGCTCAGTTGTTAGTAAAACAAGCTGCTGTGTATCATCTGTTTCG
TGATGAGCAAAATATGATTGAGATAAAAAATAATCAAAGTACACCTGGTT
ATTATTTGTAAAGACTTAACAGTAAGTTTTTAATGATTAATTTATCTGCC
ACATAACATTTAATAGATCATGGAAACATCAAGGGAGGAATGTGGTTCTG
CATCTCTAAAACCTCCTTCCTGGGCTCAGAATGGTAATAGGCGTGGAAGG
CGTCATTAGTCTTGTTAGGGGCTTGTTCCTAGAGGAATCTCTCTGCATTA
CTTTTTAGAGGGAAGGTCAAGAAAGCCACCCCCTGGGACTCCCCTGCAGA
TACAACTAACACACGCATAAACTGGATGGAAATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_k19.g1 MSMg01no422_k19.g1 CHROMAT_FILE:
MSMg01no422_k19.g1 PHD_FILE: MSMg01no422_k19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:11 2005
         (566 letters)



>mm_chr10_51007489_51008454
          Length = 966

 Score =  990 bits (512), Expect = 0.0
 Identities = 524/528 (99%)
 Strand = Plus / Minus

                                                                       
Query: 39  ggcaggtctctggatcaggaattttgaatactaagcagcaatgaatgcatgaaataaatc 98
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 ggcaggtctctggatcaggaattttgaatactaagcagcaatgaatgcatgaaataaatc 907

                                                                       
Query: 99  aaatgggagaatagtgaaaatgcttcatgcttactcttcagcaagccagatttaaaaagg 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 aaatgggagaatagtgaaaatgcttcatgcttactcttcagcaagccagatttaaaaagg 847

                                                                       
Query: 159 gagcctggctcccctcaactatttctgtgtgtaatttttttttaggaattataacttttt 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 gagcctggctcccctcaactatttctgtgtgtaatttttttttaggaattataacttttt 787

                                                                       
Query: 219 aaaaatattaagaaaatatacacaaagagagtgctggaggaaagaagagagcctcctttt 278
           ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 786 aaaaatattaagaaaatatacacaaggagagtgctggaggaaagaagagaacctcctttt 727

                                                                       
Query: 279 cttgagtctctctgctcagttgttagtaaaacaagctgctgtgtatcatctgtttcgtga 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 cttgagtctctctgctcagttgttagtaaaacaagctgctgtgtatcatctgtttcgtga 667

                                                                       
Query: 339 tgagcaaaatatgattgagataaaaaataatcaaagtacacctggttattatttgtaaag 398
           || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 666 tgggcaaaatatgattgagatcaaaaataatcaaagtacacctggttattatttgtaaag 607

                                                                       
Query: 399 acttaacagtaagtttttaatgattaatttatctgccacataacatttaatagatcatgg 458
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 acttaacagtaagtttttaatgattaatttatctgccacataacatttaatagatcatgg 547

                                                                       
Query: 459 aaacatcaagggaggaatgtggttctgcatctctaaaacctccttcctgggctcagaatg 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aaacatcaagggaggaatgtggttctgcatctctaaaacctccttcctgggctcagaatg 487

                                                           
Query: 519 gtaataggcgtggaaggcgtcattagtcttgttaggggcttgttccta 566
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gtaataggcgtggaaggcgtcattagtcttgttaggggcttgttccta 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)