BAC Information

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BAC

Clone NameMSMg01-422N09
Chromosome10 (Build37)
Map Location 102,994,866 - 102,995,109
singlet/doubletsinglet
Overlap genenone
Upstream genePamci, LOC382413, Cart1, Lrriq1, LOC100043277, 6430590A10Rik, Slc6a15, EG667697
Downstream geneLOC667701, EG627488, EG667692, EG667695, LOC100043292
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422N09.T7 (MSMg01no422_n09.b1)MSMg01-422N09.TJ (MSMg01no422_n09.g1)
ACCAG517132AG517133
length729735
length of high quality
(start - end)
481 (35 - 515)245 (64 - 308)
definitionCHROMAT_FILE: MSMg01no422_n09.b1 PHD_FILE: MSMg01no422_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:22 2005CHROMAT_FILE: MSMg01no422_n09.g1 PHD_FILE: MSMg01no422_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCATT
TTTTCAACTGAGTAGTAATCCATTATGTACATGTGCAACATTTTCTGTAT
CCATTTCTTTGTTGAAAGACATCTGGGTTTTTTCAGGCTCCTGGCTATTA
TAAATAAGGTTGCTATGAACATAGTGGAGCATGTATTATTATTACATGTC
GGAGCATCTTCTGGGTATATACCCATTAGTGGTATAGCTGTGTCCTCAGG
TAGTACTATGTACAATTTTCTGAGGAACCATCAAACTGATTTCCAGAGTG
GTTGTACCAGTTTGTTATCCCACAGCAATGGAGGAGTGCCCCTCTTTCTC
CACATCCTTGCCAGCATCTGCTGTCACTTGAGTTTTTTATCTTAGCCATT
GTGACTGGAGTGAAGAGAAATGTCAGGGTTGTTTTGATTTGCATTTCTCT
GATGACTAAGGATGTTGATCATTTCTTTAGGTTCTTCTTGGCATTTTGAT
ATTCCTCAGTTGANAATTATTTGTTTAGCTCTATACCCCATTTTTTTTAC
TTAATTGTTTTTTTATTAGGTACTTTTTTTATTTACATTTCAAATGCTAT
CCCAAAATTTCCCTATACCCTCCCCTGGCCCTGCTCCCCTACCCACCCAC
TCCTATTTCTTGGCCCTGGTGTTCCCCTGTACTGGGGCATATAAAGTTTG
CAAGACAAGGAAGCCTCTCCTTCCAATGA
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCACTGACTGCAGTGAAAATTTGACAAACTTGTTTCCT
TTCTTAGATTTTATTTTTCTGTTCTCTCCCTCTATTTTACCTCCTCTTCC
CCTTCTGTCTCTGCTCTCTGCTTCTCCCACTGAACTCTTCCCCCAGCTTG
CTCTCCCTCTTCCCCTCCCTCTCCCCCTCCTCCTCCCTCTCCCTCTCCTC
CTCCATCTCCCTCTCCCTCTCCCCCCTTGTGTTTGTCATATGCCATACAT
ACAAGAAAGTTTTTGATTGTGTAAGAAGATCAGATACTGGGGAGCCAATA
ATTCAGATGGTCATATGCCACTCAGAATGGTTATTTGAGATATCTGAAAG
AGCAACAAGTGCTCTTACCTGCTGAGCAATATTTACAGAACAGAGTTTTA
TTCTTAATATTTTTGTGTATACGGAATAATCTTTGTTTTATTTAAATAAA
AATATCTAATGAGAGAAACTCACTAATTTCTATCTGTTTAGCCTTCCATT
TTCTGTTAAGATGTTCAGTGGNTTACCTTGAATGAAGAANAAAGAGTTTG
ACTTTCTGTTATGGGGATTTGAATAGATGATTTATGGTTCTCAGTAAGAA
ATCTTTCTTAAGTGTACAATTCCAATTTAAAAATATTTCCATTAATGACT
TAAATGAACTTTTAAAATAAATGAAGGGTCCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_n09.g1 MSMg01no422_n09.g1 CHROMAT_FILE:
MSMg01no422_n09.g1 PHD_FILE: MSMg01no422_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:22 2005
         (245 letters)



>mm_chr10_102994666_102995310
          Length = 645

 Score =  404 bits (209), Expect = e-117
 Identities = 236/245 (96%), Gaps = 1/245 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgactgcagtgaaaatttgacaaacttgtttcctttcttagattttatttttctgtt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 cactgactgcagtgaaaatttgacaaatttgtttcctttcttagattttatttttctgtt 260

                                                                       
Query: 61  ctctccctctattttacctcctcttccccttctgtctctgctctctgcttctcccactga 120
           |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ctctccctctcttttacctcctcttccccttctgtctctgccctctgcttctcccactga 320

                                                                       
Query: 121 actcttcccccagcttgctctccctcttcccctccctctccccctcctcctccctctccc 180
           ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct: 321 actcttcccacagcttgctctccttcttcctctccctctccccctcctcctccc-ctccc 379

                                                                       
Query: 181 tctcctcctccatctccctctccctctccccccttgtgtttgtcatatgccatacataca 240
           ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct: 380 tctcctcctccatctccctctccctctccccccttctgtttgtcatatgccatatataca 439

                
Query: 241 agaaa 245
           |||||
Sbjct: 440 agaaa 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)