Query= MSMg01no422_n11.b1 MSMg01no422_n11.b1 CHROMAT_FILE:
MSMg01no422_n11.b1 PHD_FILE: MSMg01no422_n11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:23 2005
(488 letters)
>mm_chr10_46032412_46033299
Length = 888
Score = 833 bits (431), Expect = 0.0
Identities = 473/493 (95%), Gaps = 12/493 (2%)
Strand = Plus / Plus
Query: 1 tgtaaagctggatatggcactgtgaacctatagtcatggcattgaggagacaggaggata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaaagctggatatggcactgtgaacctatagtcatggcattgaggagacaggaggata 260
Query: 61 tctgaggcttgctagccaggcagtttagccaaatcagtgagctcaatgtccagcgacaga 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgaggcttgctaggcaggcagtttagccaaatcagtgagctcaatgtccagcgacaga 320
Query: 121 cactgtctcaaagagtaaggtgacttatatttatgctacatacacatgtagatgcaaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactgtctcaaagagtaaggtgacttatatttatgctacatacacatgtagatgcaaaga 380
Query: 181 cagacataggttcatgcaaacacacacacatgcatacatggcatagttatgtttgtgcac 240
| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct: 381 cggacataggttcatgcaaacacacacacatgcatacatgacatacttatgtttgtgcac 440
Query: 241 acactcatgtattttta-----tgcagtggcaatggtacacttatgttcatggctataca 295
||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acactcatgta-----aacacatgcagtggcaatggtacacttatgttcatggctataca 495
Query: 296 tataaaacacacatacacacacatggggtggggcggagatagaaaaataaaaagaggcag 355
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 496 tataaaacacacgtacacacacatggggtggggcagagatagaaaaataaaaagaggcag 555
Query: 356 agagagagagagaaacagagacagagtgagacagaaacagagagtcagagagaaggagag 415
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 agagagagaga--aacagagacagagtgagacagaaacagagagtcagagagaaggagag 613
Query: 416 gagtgaggaaggaaaggaggaaaaggaagaggaagaaaggatcaggaggaggaagagaag 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gagtgaggaaggaaaggaggaaaaggaagaggaagaaaggatcaggaggaggaagagaag 673
Query: 476 actaggaggaaga 488
| ||||||||||
Sbjct: 674 aaaaggaggaaga 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no422_n11.g1 MSMg01no422_n11.g1 CHROMAT_FILE:
MSMg01no422_n11.g1 PHD_FILE: MSMg01no422_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:23 2005
(286 letters)
>mm_chr10_46233896_46234581
Length = 686
Score = 524 bits (271), Expect = e-153
Identities = 282/286 (98%)
Strand = Plus / Minus
Query: 1 cctattgcaactgtacattactagtatatttcaaaatcaacttatatcacgtaatgtgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cctattgcaactgtacattactagtatatttcaaaatcaacttatatcacgtaatgtgaa 427
Query: 61 acaacactgcatgggagaataaatatattaggaaaatctcaaatgcagattcatattatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 acaacactgcatgggagaataaatatattaggaaaatctcaaatgcagattcatattatc 367
Query: 121 aagatcaaatatgtgtacaatcaagcttggaaagaaatatgacatctacattttagtttt 180
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct: 366 aagatcaaatatgtgtacaatcaagcttggaaagaaatatgacatgtgcagtttagtttt 307
Query: 181 ctaatttccgctggattaacttttacatggtaacagaagataaaggcataaatatttaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ctaatttccgctggattaacttttacatggtaacagaagataaaggcataaatatttaat 247
Query: 241 cctttgtatgcttatggntaactaatcaaaggttgataaggagcca 286
||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 246 cctttgtatgcttatggttaactaatcaaaggttgataaggagcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
