BAC Information

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BAC

Clone NameMSMg01-423H09
Chromosome10 (Build37)
Map Location 81,688,685 - 81,688,929
singlet/doubletsinglet
Overlap geneB230315N10Rik
Upstream geneAtcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712
Downstream geneLOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423H09.T7 (MSMg01no423_h09.b1)MSMg01-423H09.TJ (MSMg01no423_h09.g1)
ACCAG517611AG517612
length732735
length of high quality
(start - end)
245 (59 - 303)572 (64 - 635)
definitionCHROMAT_FILE: MSMg01no423_h09.b1 PHD_FILE: MSMg01no423_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:09 2005CHROMAT_FILE: MSMg01no423_h09.g1 PHD_FILE: MSMg01no423_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCTAAACGACTCACATACACAAGAGGATCCGCGGAATTCTTTTTG
TCATTTGAAGGTAATTAGGACATGCAAAGGTTTTACCACATTGATGATAT
TCATACCTTGTGTCTCTAGTATTCATCCTACATATCTGATGATTACTGTG
AAATGTAATGTCTTTATCTCCTTCATTATATTCATAGGATGTTATTGTGG
AACTAGTTCTTTGGTGTAATTGTAAAGAGGCCTTATCACATTGAATATAA
TCATAGAGATACTCTTCATTGTAGGTTGTGTTCTGTATTTGAAGATACCT
GTGTTATTTATAACTTTTACTGCTTGGCTCACATCCATCATGCTCTTTTC
CTACATGACTTATTTTACACCTTTGAAGAGAAAAAGAAGAACTGAGATCT
TTACCACACTGATCGCATTCATAACATTTTCCTATAGTGTGAGTCACACT
ACATATGCAAAGTAAATCAGGACGGACAGGAGATTTTCCATACTCCTTGT
ATTCATAAGGCTTTTCTCCAATGGGAGTATTTTGATGAATTCCCATTGAA
GCTGGAAAACCATTTACTTGTAAACTTATATCACATTCACCATGTCTTCT
CATAGTGGGGACGACTACATATCTTCTAAATGTTCTGGTTTAGAGAGAGG
TGTATTGCTTCTTTCCATAAGCCTTTGCTTTATATGCACTATATTGAGAA
CAGTGTAAATCCTTTTTTCCAGATTATTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXACTGGAAATGAAGGCACAGCACACCCAAACTTATGGG
ATATAATGAAAGCAGTGCTAAGAGGAAAATTCAAAGCATTAAGTACCTTC
ATAAAGAAACTGGAGAGATCCTTTACTAGTAAGTTAATAGCACACCTGAA
AGCCTAGAACAAACAGAAGCAAACACTCCCAAGAGAAAGATGGCAGGAAA
TAATTAAACTCAGTGCTGAAATCAACCAATTAGAAACAAAGTTAACAATA
CCAAGAATCGACAAAGCCAAGTGCTGGTTCTTTGAGAAAAAGAAAAAAAA
AAAGATAGATAAACCCTTAGCTAAACTAAATAAAAGGCACTGAGACAGTA
TCCAAATGAACAAAATCAGAAAAGGGAGACATAACAACCGAAATTGAGGA
AACTGAAAAAAAATCAGCAGATCTTACTACAGATGTCTATATATACCAGA
CAAAACCGGAAAATCTAGATGAAATGCATGCTTTTCTAGACAGATACCAC
ATACCAAAGTTAAATTAGGATCAGGTAAACAATCTAAACAGTCCAATAAC
TCCTAAGTAAAGAGAAGCACCCATTTTGAATCTCTCAACCAAATCCAGCC
AATGATCATTGCAGAATGTAATCCTACCTTCTCAGAGAAGCTAATAACAA
TACTCCTCAAACTATTCAACAAAGCAGAAACAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_h09.b1 MSMg01no423_h09.b1 CHROMAT_FILE:
MSMg01no423_h09.b1 PHD_FILE: MSMg01no423_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:09 2005
         (245 letters)



>mm_chr10_81688485_81689129
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtaattaggacatgcaaaggttttaccacattgatgatattcataccttgtgtctcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtaattaggacatgcaaaggttttaccacattgatgatattcataccttgtgtctcta 260

                                                                       
Query: 61  gtattcatcctacatatctgatgattactgtgaaatgtaatgtctttatctccttcatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtattcatcctacatatctgatgattactgtgaaatgtaatgtctttatctccttcatta 320

                                                                       
Query: 121 tattcataggatgttattgtggaactagttctttggtgtaattgtaaagaggccttatca 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taatcataggatgttattgtggaactagttctttggtgtaattgtaaagaggccttatca 380

                                                                       
Query: 181 cattgaatataatcatagagatactcttcattgtaggttgtgttctgtatttgaagatac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cattgaatataatcatagagatactcttcattgtaggttgtgttctgtatttgaagatac 440

                
Query: 241 ctgtg 245
           |||||
Sbjct: 441 ctgtg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)