BAC Information

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BAC

Clone NameMSMg01-423I18
Chromosome10 (Build37)
Map Location 67,835,408 - 67,988,632
singlet/doubletdoublet
Overlap gene1700040L02Rik
Upstream geneEgr2, Gm237, LOC100040081, LOC100039618, Zfp365, Plekhk1, Arid5b, LOC100040136
Downstream geneEG665342, Tmem26, A930033H14Rik, Rhobtb1, LOC100040182, Cdc2a, LOC100039696, EG382371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423I18.T7 (MSMg01no423_i18.b1)MSMg01-423I18.TJ (MSMg01no423_i18.g1)
ACCAG517677AG517678
length815758
length of high quality
(start - end)
269 (32 - 300)349 (63 - 411)
definitionCHROMAT_FILE: MSMg01no423_i18.b1 PHD_FILE: MSMg01no423_i18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:15 2005CHROMAT_FILE: MSMg01no423_i18.g1 PHD_FILE: MSMg01no423_i18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,835,408 - 67,835,669)(67,988,284 - 67,988,632)
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGTTTGAC
CCTGACATCAAAATCACTTGGAAAACAATCCTCAGTTAACCAGAAAAGGC
CATGTGGTGAGTTCAAGAACTAAATATTTGCACTTGAATACTGTTGGATT
TTGTGTTGTTTACTATAGCACTAGAATTCTGGTTCATACTTATTGATGAA
TGAATAGAAAATAAGTAAGAAGTTTTATTTTTACAGGTATGTGTAGGTGT
GTGTGTGTGTGTGTGTTTCTGCATGTGACTTCAGTACCTGTACAGATCAC
ATTTTTTTACCACATTCCCTGTAACCCGGGCCACCGGTGTTTGTTATCTC
CCCGCTCTTCCTCTCTGTGTTCCTTTCCGAGCTCCTACGCCCTCCCAGCT
TCCGTTCTTTTTTTTCCGCCTCCTCCCCCTCTTTCTTCCTTTCTTCCCCT
TCAACTTCACCCCCTCTGTTACTCATTGCCCCTTATTCCTTTTCTTCACC
CCCTTCCTTTCTTTTTTCCCCCCCCTTTTCTCCCCCTTCCTATCCTTTTT
TCAACTTTTCTTTATTTTTTTCTCCCCTTCCTTTCTAACTCTCCCTTCTC
TCTCCTTCTTTCTTCCCTTTCCTCCACTCCCTTTCATTTTTTTTACTCCA
ATTTCCCCCCTCTCTCTCCCCTTTTTTCCTTTTTTTTTTTTCTCCCTTTT
TCCTTCCTTTCCTCTTCCTTTCCCCCCTTATTTTTTCCTCCCCCCCTCTC
CTTTTTTTCCCTTTTTTTTCCCCCATTTTTTCACCCTTTTTTCCTTTTTC
CCCTTTTTTCCCCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTAAGAGGTGTAGTGCTCGAGAACTTTTATTCAAATA
CTTGCTTTCAAAACTTCCGGAGACTGTTCACTATTCAATCTCACTTTAAC
ATCTGCATTTTTCTTCTTTGTCATTACAGAAAACTGGGAGTGTTTCTGAA
TTTTAAAAATCTCCAGACTTGCCTGCGTGACGCCATCCTCTTGGACTACT
ATGTGTCTGGCTTCTGTTGGGCCAAGGAGATGAACTTTTCTATCGAGCAG
TATTCCTAGTTTATGACCTTGCTGGACATGCTACTTCATAATCTTCAAAG
TGAGTGTGATCCCTCGCTGTCGTTTTAAGGGGAGGGAATGCAGTGTATGT
AAATTAATATTCAAAAGCCAAGACTCTTGCTTCATTGTGACTCCTTTAAT
AAGGACTGCGGCCTTGTTTCTTAGATACAGATACGACCGGGGCAGCTCAT
TTCTCATTGAAAGGTAAATCCTCACAGAATTCTTAGTAAACTAAGGTTCT
CTTTGTTGATTCGCCAAAGATATTCTAGTTAGGCTTCCCCGCACCCCAGA
TATCTGAAGATACGCTGATATTTTGGCCATGCTCCGTATATCTCGAACTA
TTTTGAAATCCCCATAATTCCATCCGTCTTTTCCAGTGGAATACTATGCT
AGCTAAAAATAGTCAAATACCTGACCACTTTCTGGGCGCCGCTTGTCAAA
ATACCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_i18.b1 MSMg01no423_i18.b1 CHROMAT_FILE:
MSMg01no423_i18.b1 PHD_FILE: MSMg01no423_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:15 2005
         (269 letters)



>mm_chr10_67835204_67835872
          Length = 669

 Score =  460 bits (238), Expect = e-134
 Identities = 257/264 (97%), Gaps = 2/264 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagtttgaccctgacatcaaaatcacttggaaaacaatcctcagttaaccagaa 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctagtttgagtctgacatcaaaatcacttggaaaacaatcctcagttaaccagaa 264

                                                                       
Query: 65  aaggccatgtggtgagttcaagaactaaatatttgcacttgaatactgttggattttgtg 124
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 265 aaggccatgtggtgagttcaagaaataaatatttgcacttgaatactgttggattttgtg 324

                                                                       
Query: 125 ttgtttactatagcactagaattctggttcatacttattgatgaatgaatagaaaataag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgtttactatagcactagaattctggttcatacttattgatgaatgaatagaaaataag 384

                                                                       
Query: 185 taagaagttttatttttacaggtatgtgtaggtgtgtgtgtgtgtgtgtgtttctgcatg 244
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 385 taagaagttttatttttacaggtatgtgtaggtgtgtgtgtgtgtgtgt--ttctgcatg 442

                                   
Query: 245 tgacttcagtacctgtacagatca 268
           ||| ||||||||||||| ||||||
Sbjct: 443 tgagttcagtacctgtagagatca 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no423_i18.g1 MSMg01no423_i18.g1 CHROMAT_FILE:
MSMg01no423_i18.g1 PHD_FILE: MSMg01no423_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:15 2005
         (349 letters)



>mm_chr10_67988084_67988832
          Length = 749

 Score =  629 bits (325), Expect = 0.0
 Identities = 343/349 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaagaggtgtagtgctcgagaacttttattcaaatacttgctttcaaaacttccggag 60
           |||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 549 tttaagaggtgtagcgttcgagaacttatattcaaatacttgctttcaaaacttccggag 490

                                                                       
Query: 61  actgttcactattcaatctcactttaacatctgcatttttcttctttgtcattacagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 actgttcactattcaatctcactttaacatctgcatttttcttctttgtcattacagaaa 430

                                                                       
Query: 121 actgggagtgtttctgaattttaaaaatctccagacttgcctgcgtgacgccatcctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 actgggagtgtttctgaattttaaaaatctccagacttgcctgcgtgacgccatcctctt 370

                                                                       
Query: 181 ggactactatgtgtctggcttctgttgggccaaggagatgaacttttctatcgagcagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 369 ggactactatgtgtctggcttctgttgggccaaggagatgaacttttctattgagcagta 310

                                                                       
Query: 241 ttcctagtttatgaccttgctggacatgctacttcataatcttcaaagtgagtgtgatcc 300
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttccaagtttatgaccttgctggacatgctacttcataatcttcaaagtgagtgtgatcc 250

                                                            
Query: 301 ctcgctgtcgttttaaggggagggaatgcagtgtatgtaaattaatatt 349
           |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 249 ctcgctgtcgttttaaggggagggaatgcagtatatgtaaattaatatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)