BAC Information

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BAC

Clone NameMSMg01-423P14
Chromosome10 (Build37)
Map Location 53,712,966 - 53,713,376
singlet/doubletsinglet
Overlap geneMan1a
Upstream geneSlc35f1, Pln, EG432460, Mcm9, Asf1a, LOC100042554, 4930589M24Rik
Downstream geneLOC100041898
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423P14.T7 (MSMg01no423_p14.b1)MSMg01-423P14.TJ (MSMg01no423_p14.g1)
ACCAG518003AG518004
length763747
length of high quality
(start - end)
502 (34 - 535)496 (64 - 559)
definitionCHROMAT_FILE: MSMg01no423_p14.b1 PHD_FILE: MSMg01no423_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:47 2005CHROMAT_FILE: MSMg01no423_p14.g1 PHD_FILE: MSMg01no423_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTGATCT
CTCCAAGACTTTTAACATGATGTGGTGTTGTATTTTGTCAAAGGCTTTTT
CAGTATCTAGTTAGACTGTCATGTGACTTTTCCCATTGAGTTTATTATAT
AGTGGATTACATTGATAGATTTCTATATATTGAACCTTTCCTGCATCCCT
GGGATGAAGCCTACTTGATCATGTTGAATGATGGCTTTGATGTGTCCTTG
GATTCAGTTTTCAAGAATTTTCTTGGGTTTTTCATCAATATTCATAAGTA
AAATTGATCTGAAATTCTCTTTCTTTGTTGGGTCTTTTTGTGGTTTAGGT
GTCAAGAGTAACTGAGGCTTCACGGAATAAATTGGTTAGTGTTCCTTCTG
TTTCTATTTTGTGGAATAGTTTGAGGAGTATTGGTATTAGCTCTCCTTTG
AAGGTTTGGTAGAATTCTGCACTAATACCATCTGGCCCTGGACTTTTCGG
TTGGGAGGTTTTTAATGACTATTTATATTTCCTTAGGAGTTATGGGGCTA
TTAAGATAGTTATCAGGTCTTGAGCTAACTTTGGAAAGTGTTACCCTTCT
ACAAAAACATCCCATTTCTTCTAAATTTTCCAGCTTTTGTCGAAAATCTG
TGGTTCGNAACCAAACTCTCTTGCCATTCTGTACCTTTTTACTTTCTCCC
CTTTTTTGCCCCCCCTCTTTTTTTTTTTATTTTTGTTTATACTTCCTATT
TTCTCTCCAATTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCTGTAAAGAACAAGAAGGAGTTATGGTTGGGATAGG
GCCACTAGAATTTCCTGGGATTTATTTTGGATCTCTTGTCAGTCTGTCTG
AGAACTTTGTTTATTAATTTTATGCATGTAAATCAAGTTTATGTATATAT
GTCTACTTTGATGTACATAAATCACATTATAGTTCAGATCTAAAGCTTAA
TCCAAATATAATGTGTGTGTATGTATATATACATACATACATATACATAC
ATACATAAATATAAAACATATGTGTATAAGTTATTCAGTGGATACAAATT
TTTAGCTTTTGTAGGTAAATGCCAAAAAGAATGACAGCCAACTTTATATG
CTAAGATTATGTTTAGTTTTATAAAACATTATCAAACCATCTGCCAAAGT
ATCTGTATCATTAGAGGCCCAATATCTATAAATATGGGTTGATAACAAGG
CATTCAGTATGCTCAGTGCTGTAGATTCAGGCCATTCTGATCAGTATGCA
TTGGTATCTTGGGTAGTTGTTTTAATTGCTATCGNTCTGATGATGTGAGG
AGAATCTTTTTATTTGCCTATTTGGCATTCCTCTTTCTACTCTGTTGACA
TTGGCTATGAAGGCCTTTGTCCCCTTGTGAAATCAGGATTTTTTGTTGGG
GTATTGTGCCATAAATTGACCATTAACAAATATAAACGAACCTGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_p14.g1 MSMg01no423_p14.g1 CHROMAT_FILE:
MSMg01no423_p14.g1 PHD_FILE: MSMg01no423_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:48 2005
         (496 letters)



>mm_chr10_53712966_53713861
          Length = 896

 Score =  756 bits (391), Expect = 0.0
 Identities = 406/411 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgtaaagaacaagaaggagttatggttgggatagggccactagaatttcctgggattt 60
           |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 411 tctgtaaagaacaagaaggaattatggttgggatagggccactagaagttcctgggattt 352

                                                                       
Query: 61  attttggatctcttgtcagtctgtctgagaactttgtttattaattttatgcatgtaaat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 351 attttggatctcttgtcagtctgtctgagaactttgtttattaattttatgcatataaat 292

                                                                       
Query: 121 caagtttatgtatatatgtctactttgatgtacataaatcacattatagttcagatctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 caagtttatgtatatatgtctactttgatgtacataaatcacattatagttcagatctaa 232

                                                                       
Query: 181 agcttaatccaaatataatgtgtgtgtatgtatatatacatacatacatatacatacata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 agcttaatccaaatataatgtgtgtgtatgtatatatacatacatacatatacatacata 172

                                                                       
Query: 241 cataaatataaaacatatgtgtataagttattcagtggatacaaatttttagcttttgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 cataaatataaaacatatgtgtataagttattcagtggatacaaatttttagcttttgta 112

                                                                       
Query: 301 ggtaaatgccaaaaagaatgacagccaactttatatgctaagattatgtttagttttata 360
           ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 111 ggtaaatgccaaatagaatgacagccaagtttatatgctaagattatgtttagttttata 52

                                                              
Query: 361 aaacattatcaaaccatctgccaaagtatctgtatcattagaggcccaata 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  aaacattatcaaaccatctgccaaagtatctgtatcattagaggcccaata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)