BAC Information

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BAC

Clone NameMSMg01-424A09
Chromosome10 (Build37)
Map Location 81,751,653 - 81,752,093
singlet/doubletsinglet
Overlap genenone
Upstream geneTjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718
Downstream geneEG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3, EG216185, Chst11, Slc41a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424A09.T7 (MSMg01no424_a09.b1)MSMg01-424A09.TJ (MSMg01no424_a09.g1)
ACCAG518041AG518042
length737745
length of high quality
(start - end)
380 (321 - 700)440 (76 - 515)
definitionCHROMAT_FILE: MSMg01no424_a09.b1 PHD_FILE: MSMg01no424_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:51 2005CHROMAT_FILE: MSMg01no424_a09.g1 PHD_FILE: MSMg01no424_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:52 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAATTGACAACTGTTAGCAATGAGATGGGTCCTATCCTTCCTGGG
GGAGATGGTTACAACATTCAGGCAAGGCAACCTCTGAAGAACAAAATTGT
CATGCTTATGCAGCAAGGAGAGACCTGGCCCTGACAGAATGAAAGAGGAT
GTTTTAAGTAAGAGAGAGACAGAGAAGATAATAAAGAGACCTGTAGATGG
GTATGAACAGGAACCCTAGCAGCAGATACATCTTCCACCAACTGATACAT
CTTCCAGCAGCAGATATATCTTCCAGCAACTGATACATCTTCCAGCTCAG
ATACATCTTCCAGCAACTGATACATCTTCCAGCAACTGATACATCTTCCA
GCAGCAGATACATCTTCCAGCAACTGATACATCTTCCAGTAGAATATACA
TCTTACAGCAGCAGATACATCTTCCAGCAGCCAGGGATTTCAGAAAGAGG
TGAGGGCAAAGAACAAGGACCCGTGCCTATGGTTCCTGAGGTACAGGCAT
CCTTGGGGCTTTTGAGGCTGACTCTCAGAAACCTTGTGTCACCAACCCAG
GTGGAGATGGAAGTTGTTGGGTAGAAATTTAGAAGGCCTCATTTGCAATA
GTAGTGTCTGCCTTCTCACCATTCCTCAGAAGCCCAAGAAAGTACTTCAG
GCTCCAGCTTAGCAAGGCTTAAGCAATTGCTACTAAT
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCAGGAATTCACTCAGAGCAACAGTTGCCAGATGTG
AAGTCCTCTGAGTTGGGCTGGAAACAGGTACACTGTCTTTAGGGTTCAAC
TCTGGGCCACAGTTGCAGGAGATAAAACCTTCTGTGGTGAGCACAGAGGT
TAAGCTGCTAGAAGAGTCACCTCAGGAATTGAAGCATAAACCTAGATTGC
AATTTAGGAAATCTTGTGACTGGAGTCACAGTAAAAATGTTATGGCACCC
AACACCGAGATACAAGATGTATTTTTATCTGACTTGCACCCTAGTCCAGA
ACTTCAGGGTATAAAATCTAAGGTGTTCTGTCCTAGGTTACACTTGGAAG
ATGTGATGCCTGCATGTACTCCCAATTTAAATTCTCAATAGGTAAATTCC
AGTGAGTATATATCTGGGCCATATTTTCAAGATACAAATTCCTCTACATG
TATTCCAGAGACAAATGTTCATTGTATAAGTTTTGAGTGCAATCCAGGAA
TACATTTGTATGGAACGAATACTTCCTCATGCTTTTCAGGATCTAAATAT
TTTGTTTTAGATTCTTCTGTTTAGCAACTCTGATTCATATTTGCCTAGAT
GAAATTTCCATTGTATGCACTTTAGGGCCAAGACCTTATTGTTTATAGCC
TCTCCGTTTGTTCATCTTACCCTAAAATCTCCATTTGGTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_a09.g1 MSMg01no424_a09.g1 CHROMAT_FILE:
MSMg01no424_a09.g1 PHD_FILE: MSMg01no424_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:52 2005
         (440 letters)



>mm_chr10_81751453_81752293
          Length = 841

 Score =  482 bits (249), Expect = e-140
 Identities = 395/445 (88%), Gaps = 9/445 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagagcaacagttgccagatgtgaagtcctctgagttggg-ctggaaacaggtacact 59
           |||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| 
Sbjct: 641 ctcagagcaacagttgccagatgtgaagccctctgagttgggcctgggaacaggtacaca 582

                                                                       
Query: 60  gtctttagggttcaactctgggccacagttgcaggagataaaaccttctgtggtgagcac 119
           |||||||||||||||| ||||||||||||| || ||| ||||| ||||||  ||||||||
Sbjct: 581 gtctttagggttcaaccctgggccacagtttcaagagctaaaatcttctgcagtgagcac 522

                                                                       
Query: 120 agaggttaagctgctagaagagtca-cctcaggaattgaagcataaacctagattgcaat 178
           |||||| |||||||||||||||||| | || |||||| |||||| ||||||||||||| |
Sbjct: 521 agaggtcaagctgctagaagagtcatcttc-ggaattcaagcatgaacctagattgcact 463

                                                                       
Query: 179 ttaggaaatcttgtgactggagtcacagtaaaaatgttatggcacccaacaccgagatac 238
            ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 462 gtaggaaaccctgtgactggagtcacagtaaaaatgttatggcacccaaaaccgagatac 403

                                                                       
Query: 239 aagatgtatttttatctgacttgcaccctagtccagaacttcagggtataaaatctaagg 298
           ||||||||   |||||||| ||||||||| ||||| | |||||||||||| | |||||||
Sbjct: 402 aagatgtagaattatctgagttgcaccctggtccataccttcagggtatacactctaagg 343

                                                                       
Query: 299 tgttctgtcc-taggttacacttggaagatgtga--tgcctgcatgtactcccaatttaa 355
            |||| |||| | ||| ||||||||||||| |||  |  |||| |||||||||||| |||
Sbjct: 342 agttc-gtccctgggtcacacttggaagatctgaact--ctgcttgtactcccaatataa 286

                                                                       
Query: 356 attctcaataggtaaattccagtgagtatatatctgggccatattttcaagatacaaatt 415
           |||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 285 attctcaatatgtaaattccagtgagtatatatctaggccatatttgcaagatacaaatt 226

                                    
Query: 416 cctctacatgtattccagagacaaa 440
           ||| | |||| ||||||||| ||||
Sbjct: 225 cctttgcatgcattccagagccaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 841
Length adjustment: 9
Effective length of query: 431
Effective length of database: 832
Effective search space:   358592
Effective search space used:   358592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)