BAC Information

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BAC

Clone NameMSMg01-424D14
Chromosome10 (Build37)
Map Location 32,290,128 - 32,290,711
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneIbrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761, Trdn, A330019N05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424D14.T7 (MSMg01no424_d14.b1)MSMg01-424D14.TJ (MSMg01no424_d14.g1)
ACCAG518195AG518196
length740742
length of high quality
(start - end)
624 (67 - 690)503 (69 - 571)
definitionCHROMAT_FILE: MSMg01no424_d14.b1 PHD_FILE: MSMg01no424_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:07 2005CHROMAT_FILE: MSMg01no424_d14.g1 PHD_FILE: MSMg01no424_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAGATATACACGAGGTCCAACATTATAATCCTCCTCCCCCAAGGAT
GCTAGTCTCAGGCCTGGTGTTTGTTTGTAAAATAGATAAATACTCAATAC
ATTTTTTATTTTTGACAGATAGAAATCTGCAAACAAAGATGTGCTCTTTC
CAGAGCTAAAGAAAAATTCAAAGAGTTGAAGTCTTTTATCTTCAACAGTC
AATGCCATCCTGTTCTGGCTGTACTGAAAATGTACCAGAGCCACCAATTT
CCTGCCTTTGCATGTGCACTCTTCTCTTATCCAGAGTCATTCTTTGCTCT
TTCTCACCAAATGATCCCTCTTTAGCTACACACTAAGAATCCATTTCCCC
TTGAATATCCATGGGCCTAGATCCAATGACTTCCTTTTCAGTGTGTGTGT
GTTTTATTACATATTTTCTTAATTTACATTTCAAATGCTATCCCCAAAGC
CCCCTATACCCTCCCCAACCCACCCACTCCTGATTTCTGGCCCTGGCATT
CTCCTGTACTGGGGCATATGATCTTCACAAGATCAAGGGACTCTCCTCCC
TTTGATGGCCTGCTAGGCCATCCTCTGCTGCATATGCAACTAGAGACACA
GCTCTGGGGGAGGGGTGTAGTGGTTAGTTTAAATTGTTGTTCCTCCTATA
AGGCTGCAGACTCCCTTAGCTCCATGGGCAACTTACTCTN
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTCAGAAATTCCTGATCTTTCCAAGTCTTTTATCATGCAT
GGGTGTTGGATATTGTTAAATGCTTTCTCAGCATCTATCGAGATGATCAT
GTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATCACGTTGATGGATT
TCTTTACATAAAACCATCCCTGCATCCCTGGAATGAAGCCTACTTGTTAA
TGATGGAAGATTGTTTTGATGTGTCCTTGAATTCCATTAGTGAGAATTTT
AATGAGTATTTTTGCATTTATTTCAGAAGGGAAATTGGTCTGAAGTTCTC
TATTTTTGTTAGATCTTTATGTGGTTTAGATATCAGAATAATTGTGACTT
CATAGAATGATTTGGGTATAGTACTTTCTGTTTCTATTTTGTGGAATAGT
TTGAGGAGAACTCGAATTAGGTCTTCCTTGAAGGTCTGATAGAACTCTGC
ACAATATCCATCTGTTCCTGGGATTTTTTTGGGTTGGGAGACTATTAATG
AGTGCTTCTATTTCTTTCGGGGATATGTGACTGTTTAGGCCATTAATCTG
ATCCTGATTTAACTTTGGTACCTTGCATTTGCCTACAAATTTGTCCAGCT
CATCTAGTTTTTCCAGTTTTCGTTGAGCATAGTCTTTTTGTAGCAGCTAT
CGATTATGCTTTGTTTTTCCCCTCGTGCTGTTTTTTATCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_d14.b1 MSMg01no424_d14.b1 CHROMAT_FILE:
MSMg01no424_d14.b1 PHD_FILE: MSMg01no424_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:07 2005
         (624 letters)



>mm_chr10_32290128_32291150
          Length = 1023

 Score = 1050 bits (543), Expect = 0.0
 Identities = 568/585 (97%), Gaps = 15/585 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtccaacattataatcctcctcccccaaggatgctagtctcaggcctggtgtttgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aggtccaacattataatcctcctcccccaaggatgctagtctcaggcctggtgtttgttt 525

                                                                       
Query: 61  gtaaaatagataaatactcaatacattttttatttttgacagatagaaatctgcaaacaa 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 524 gtaaaatagataaatactcaatacatttttt-tttttgacagatagaaatctgcaaacaa 466

                                                                       
Query: 121 agatgtgctctttccagagctaaagaaaaattcaaagagttgaagtcttttatcttcaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agatgtgctctttccagagctaaagaaaaattcaaagagttgaagtcttttatcttcaac 406

                                                                       
Query: 181 agtcaatgccatcctgttctggctgtactgaaaatgtaccagagccaccaatttcctgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agtcaatgccatcctgttctggctgtactgaaaatgtaccagagccaccaatttcctgcc 346

                                                                       
Query: 241 tttgcatgtgcactcttctcttatccagagtcattctttgctctttctcaccaaatgatc 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tttgcatgtgtactcttctcttatccagagtcattctttgctctttctcaccaaatgatc 286

                                                                       
Query: 301 cctctttagctacacactaagaatccatttccccttgaatatccatgggcctagatccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cctctttagctacacactaagaatccatttccccttgaatatccatgggcctagatccaa 226

                                                                       
Query: 361 tgacttccttttcagtgtgtgtgtgttttattacatattttcttaatttacatttcaaat 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tgacttctttttcagtgtgtgtgtgttttattacatattttcttaatttacatttcaaat 166

                                                                       
Query: 421 gctatccccaaagccccctatacc--------------ctccccaacccacccactcctg 466
           ||||||||||||||||||||||||              ||||||||||||||||||||||
Sbjct: 165 gctatccccaaagccccctataccctccctccaccctgctccccaacccacccactcctg 106

                                                                       
Query: 467 atttctggccctggcattctcctgtactggggcatatgatcttcacaagatcaagggact 526
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 atttctggccctggcattctcctgtactggggcatatgatcttcacaagatcaagggact 46

                                                        
Query: 527 ctcctccctttgatggcctgctaggccatcctctgctgcatatgc 571
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  ctcctccctttgatggcctgctaggccatcctctgctgcatatgc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1023
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1013
Effective search space:   621982
Effective search space used:   621982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)