BAC Information

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BAC

Clone NameMSMg01-424E04
Chromosome10 (Build37)
Map Location 22,574,182 - 22,739,462
singlet/doubletdoublet
Overlap genenone
Upstream geneSgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281, LOC432438, Raet1d, LOC667299, LOC667303, LOC100040072, LOC100040078, Slc2a12, Tbpl1, Tcf21
Downstream geneEya4, Rps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424E04.T7 (MSMg01no424_e04.b1)MSMg01-424E04.TJ (MSMg01no424_e04.g1)
ACCAG518223AG518224
length736763
length of high quality
(start - end)		592 (45 - 636)473 (78 - 550)
definitionCHROMAT_FILE: MSMg01no424_e04.b1 PHD_FILE: MSMg01no424_e04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:10 2005CHROMAT_FILE: MSMg01no424_e04.g1 PHD_FILE: MSMg01no424_e04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,574,182 - 22,574,768)(22,738,993 - 22,739,462)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGG
AATTCAAAATCTCTTAAGGACACAAAGCAAAAGTGTTTATGGGCAGCAAT
AAGGATCTCTGCACAGTGACTTTAGAATGTCGCAGCTCTCCCCCCTCATC
TTAGATCCCTGGGGAATGAGGGCAGAGCAAGGGAGCCTAAACCGCAGCGT
AATCAGGGAGCACAGATGGGTAGTATGGCTTATCAGCCTCAGCACGTGTG
GGCAGTGAGGGAAAAGGAGCAGCGGAGGCAGTGGCCTTGGCTCGGTGGGC
TTTCTGGGGACCTGCTTTATTTACTTGTTTATTTTGGTATCCCTGAGAAT
GGAACCCAGAGTCTCATGTGTCACTCAAGCTTGACAAACGCTCTACCCAT
CCAGCAAGGGGGCAATGCTAGATAGCAGGGGGTGATGCTCCCTCCAGAGA
GGCCTTTTCTCTGGCGTCCCACCCCTGAACACTCATTTACACCATCACTA
ACATATCAACTATGCCTCTGATAGAAAACTCTGAAACAAAACTCATATTT
CATGTGAATATGCGCTGCTGAAACTCAGCTGAGGTTTGAAGAGGATGTGT
TCTGCTGTGACATCATTTCCGGACCGTGCCTTCTGAAAACAAACAGTCTG
GATTTGTTAGGGGTTGAATGTCAAATGTTCCTTACAGACTCCTGTGCTTG
ATGACTTGTTTCCCCGAGTGAGGCACTATTTGGGAC

CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTATAGTTTCAAAACTAAAAGA
CATGGTTTGAGATACTTCCTATATGATGAGGGACTTTGGAGATATGACTT
GGGTATAAGTAAATTTCTAAGAACCTTTTGGACTCACCCAGGAGTCACAT
GACATCAGATAAACACAGTGGAGGTGTTCTATTTTGTTTATATGGAGGCT
TCTCTAATCTCTGCCTTGAGCTTCCTTTGTTTGAGCCATAGTTACACAGC
CCCCAGGAACAGGTGTTTAGTAAAGGATGAGGTAATGATTCCTGTGATGA
GAAAACAATGTGCCTCCGAGAAAAGGATGGACTGGAGGGGAAAGGGCACA
GCAGATGGGACCACAGATGGTGGTAGAACAGAATAATGAAGAGATTCAAG
GTAGTGATGAAATTACAACAGTAATGGGCACAAGTAACGGAAACTTCTGG
AACCTTTTCCTTTATAAATGACATATGGTCTTTGTTTTACGACTTTTCAT
TGCAAAAACTGTCTCTATTTGCAGATGGAAGCTATAGAATCTTTTATACA
AAATGATGGAGATTGTGTAACTCTGAGACTTGTGTCCGCCCCGATGTATC
CCCACCTCTTTTTATTTCTCTAGCTCCCACCTTCTCTCTATTCCGCTGCT
CATTTCTACTTTTTTGTTTTTTTTTGCTTTCATCGCATCCCGCGCTTTAT
TTTTCTCTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_e04.b1 MSMg01no424_e04.b1 CHROMAT_FILE:
MSMg01no424_e04.b1 PHD_FILE: MSMg01no424_e04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:10 2005
         (592 letters)



>mm_chr10_22573977_22574968
          Length = 992

 Score = 1112 bits (575), Expect = 0.0
 Identities = 584/587 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaaaatctcttaaggacacaaagcaaaagtgtttatgggcagcaataaggatctc 65
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaaaatcacttaaggacacaaagcaaaagtgtttatgggcagcaataaggatctc 265

                                                                       
Query: 66  tgcacagtgactttagaatgtcgcagctctcccccctcatcttagatccctggggaatga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tgcacagtgactttagaatgtcgcagctctcccccctcatcttagatccctggggaatga 325

                                                                       
Query: 126 gggcagagcaagggagcctaaaccgcagcgtaatcagggagcacagatgggtagtatggc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 gggcagagcaagggagcctaaaccgcagcgtaatcagggagcacagatgggtagtatggc 385

                                                                       
Query: 186 ttatcagcctcagcacgtgtgggcagtgagggaaaaggagcagcggaggcagtggccttg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttatcagcctcagcacgtgtgggcagtgagggaaaaggagcagcggaggcagtggccttg 445

                                                                       
Query: 246 gctcggtgggctttctggggacctgctttatttacttgtttattttggtatccctgagaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gctcggtgggctttctggggacctgctttatttacttgtttattttggtatccctgagaa 505

                                                                       
Query: 306 tggaacccagagtctcatgtgtcactcaagcttgacaaacgctctacccatccagcaagg 365
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 506 tggaacccagagtctcatgtgtcactcaagcttgacaaacgctctacccagccagcaagg 565

                                                                       
Query: 366 gggcaatgctagatagcagggggtgatgctccctccagagaggccttttctctggcgtcc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gggcaatgctagatagcagggggtgatgctccctccagagaggccttttctctggcgtcc 625

                                                                       
Query: 426 cacccctgaacactcatttacaccatcactaacatatcaactatgcctctgatagaaaac 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cacccctgaacactcatttacaccatcactaacatatcaactatgcctctgatagaaaac 685

                                                                       
Query: 486 tctgaaacaaaactcatatttcatgtgaatatgcgctgctgaaactcagctgaggtttga 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tctgaaacaaaactcatatttcatgtgaatatgcgctgctgaaactcagctgaggtttga 745

                                                          
Query: 546 agaggatgtgttctgctgtgacatcatttccggaccgtgccttctga 592
           ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 746 agaggatgtgttctgctgtgacatcatttccggtccgtgccttctga 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no424_e04.g1 MSMg01no424_e04.g1 CHROMAT_FILE:
MSMg01no424_e04.g1 PHD_FILE: MSMg01no424_e04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:10 2005
         (473 letters)



>mm_chr10_22738790_22739662
          Length = 873

 Score =  808 bits (418), Expect = 0.0
 Identities = 457/470 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   atagtttcaaaactaaaagacatggtttgagatacttcctatatgatgagggactttgga 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 atagtttcaaaactaaaagacatggtttgagatacttcctatatgatgagggactttgga 614

                                                                       
Query: 64  gatatgacttgggtataagtaaatttctaagaaccttttggactcacccaggagtcacat 123
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gatatggcttgggtataagtaaatttctaagaaccttttggactcacccaggagtcacat 554

                                                                       
Query: 124 gacatcagataaacacagtggaggtgttctattttgtttatatggaggcttctctaatct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gacatcagataaacacagtggaggtgttctattttgtttatatggaggcttctctaatct 494

                                                                       
Query: 184 ctgccttgagcttcctttgtttgagccatagttacacagcccccaggaacaggtgtttag 243
           ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 493 ctgtcttgagcttcctttgtttgagccatagttacacagcctccaggaacaggtgtttag 434

                                                                       
Query: 244 taaaggatgaggtaatgattcctgtgatgagaaaacaatgtgcctccgagaaaaggatgg 303
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 433 taaaggatgaggtgatgattcctgtgatgagaaaacaatgtgcctccgagaaaaagatgg 374

                                                                       
Query: 304 actggaggggaaagggcacagcagatgggaccacagatggtggtagaacagaataatgaa 363
           ||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 373 actggaggggaaaggacacagcagatgggaccacagaaggtggcagaacagaataatgaa 314

                                                                       
Query: 364 gagattcaaggtagtgatgaaattacaacagtaatgggcacaagtaacggaaacttctgg 423
           |||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 313 gagattcaaggtagtggtgaaattagaacagtaatgggcacaagtaatggaaacttctgg 254

                                                             
Query: 424 aaccttttcctttataaatgacatatggtctttgttttacgacttttcat 473
           ||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 253 aaccttttcctttataaatgacatatggtttttgttttatgacttttcat 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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