BAC Information

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BAC

Clone NameMSMg01-424J14
Chromosome10 (Build37)
Map Location 32,093,179 - 32,093,564
singlet/doubletsinglet
Overlap geneTcba1
Upstream geneTpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638
Downstream geneEG667761, Trdn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424J14.T7 (MSMg01no424_j14.b1)MSMg01-424J14.TJ (MSMg01no424_j14.g1)
ACCAG518481AG518482
length737747
length of high quality
(start - end)		635 (47 - 681)386 (326 - 711)
definitionCHROMAT_FILE: MSMg01no424_j14.b1 PHD_FILE: MSMg01no424_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:36 2005CHROMAT_FILE: MSMg01no424_j14.g1 PHD_FILE: MSMg01no424_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCTTCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT
TTATGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGGTGGTGGTCT
TTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAAAAGCTTTGCAATATTA
TGAGGTTCGATTTATCGATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTATTCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTACCTAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTTCTTAA
TCCACTTAGATTTGACCTTAGTACAAGGAGATAGGAATTGATTGATTCGC
AATCTTCTACATGATAACAGCCAGTTGTGCCAGCACCATTTGTTGAAAAT
GCTGTCTTTTTTTCCACTGGATGGTTTTAGCTCCCTTGACAAAGATCAAG
TGACCATAGGTGTGTGGGTTCATCTCTGGGTCTTCTATTCTTTTCCATTG
GTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTG
CTCTGTAGTACAGCTTTAGGTCGGACATGGTGATTCCACCAGAGGTTCTT
TTTATCTTTGAGAAGAGTTCTTGCTATCCTAGGTTTT

CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGTCATGAAGAGATATTTTAATAGTT
TCCTTTAATATAAATGAACATCTCTCATGTGAACTATTTTTATAAGACAG
TTATATATGTTTATATAGCATTAACTTATATTTTTATATAAACTTATATA
TCTATATTGTATGACCAGATAAAATTAATACTATAAATTATATAGATACC
ACTATTTGCTTTCAGAGTTTTACTACATCAAAATAATAATAATAATAATA
ATGTATTTCCAATGCAGAATATTAAGTAGTTGTATCTACATTTGTAAAAT
GTTTATTGTGTCAAAAATACCAAATCTGATATCTTGTTCTTGTGACTCAA
TGCATAAAGCCACAAGAATCCCATACACAAGGCAATAAAATGACTAGAAT
ATGAACTAAAAGCTATAGATTTTTATCCCCCAATGGGCTTTTCAAAGGCA
AATGAGCAGATACTGTGCATAAAATGTTACAGTGTCAAGGATGGTAGTAA
AAGGACAGATTTCACTAAGGATAATAGCGCAAAAGGAAAAGACCTAATGA
AACTGAAGAAACACAACTCAGGAAGCTTTGACATGTGTAAAATTATTCAT
GGGTCTAAAGTTGCTAAGAGCCTGAAATCCTTTCTGGTTTCTAGAAAATC
AACATATCGAAGAAGTGACTTTAATTATACAGACTTAGCATGTGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_j14.g1 MSMg01no424_j14.g1 CHROMAT_FILE:
MSMg01no424_j14.g1 PHD_FILE: MSMg01no424_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:36 2005
         (386 letters)



>mm_chr10_32092979_32093764
          Length = 786

 Score =  739 bits (382), Expect = 0.0
 Identities = 385/386 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtagttgtatctacatttgtaaaatgtttattgtgtcaaaaataccaaatctgatatctt 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 586 gtagttgtatctacatttgtaaaatgtttattgtgtcaaaattaccaaatctgatatctt 527

                                                                       
Query: 61  gttcttgtgactcaatgcataaagccacaagaatcccatacacaaggcaataaaatgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gttcttgtgactcaatgcataaagccacaagaatcccatacacaaggcaataaaatgact 467

                                                                       
Query: 121 agaatatgaactaaaagctatagatttttatcccccaatgggcttttcaaaggcaaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 agaatatgaactaaaagctatagatttttatcccccaatgggcttttcaaaggcaaatga 407

                                                                       
Query: 181 gcagatactgtgcataaaatgttacagtgtcaaggatggtagtaaaaggacagatttcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gcagatactgtgcataaaatgttacagtgtcaaggatggtagtaaaaggacagatttcac 347

                                                                       
Query: 241 taaggataatagcgcaaaaggaaaagacctaatgaaactgaagaaacacaactcaggaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 taaggataatagcgcaaaaggaaaagacctaatgaaactgaagaaacacaactcaggaag 287

                                                                       
Query: 301 ctttgacatgtgtaaaattattcatgggtctaaagttgctaagagcctgaaatcctttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ctttgacatgtgtaaaattattcatgggtctaaagttgctaagagcctgaaatcctttct 227

                                     
Query: 361 ggtttctagaaaatcaacatatcgaa 386
           ||||||||||||||||||||||||||
Sbjct: 226 ggtttctagaaaatcaacatatcgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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