BAC Information

Click to search

BAC

Clone NameMSMg01-424K24
Chromosome10 (Build37)
Map Location 92,776,293 - 92,790,622
singlet/doubletdoublet
Overlap geneLOC100041854
Upstream geneLOC216229, LOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3
Downstream geneLta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424K24.T7 (MSMg01no424_k24.b1)MSMg01-424K24.TJ (MSMg01no424_k24.g1)
ACCAG518548AG518549
length759761
length of high quality
(start - end)		551 (43 - 593)556 (78 - 633)
definitionCHROMAT_FILE: MSMg01no424_k24.b1 PHD_FILE: MSMg01no424_k24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:42 2005CHROMAT_FILE: MSMg01no424_k24.g1 PHD_FILE: MSMg01no424_k24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,790,075 - 92,790,622)(92,776,293 - 92,776,848)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTTTGTATACCAGGCTTGCCTCGAACTCAGAAATCTGCCTGTCTCTG
CCTCCCAAATGCTGGGATTAAAGGCGTGTGCCACCACTGCCTGGCGCCAG
ATGAGATCTCAAGCAAGCAGCCATCCACAAATGCAGTGACTTGGAAAAGA
GTAACAAAAAACAGAAAGTGGGGAGGCTGGAGGTATAAGGTCCAAACCTG
CCATTTTTGGTGCCTTTGAACACAAATGAAGATAGTTTAGCTGTCCTGGG
CCTGGGGTTTTCATTTATTCCATGTTTGCTTATTTGCTTTACCCTCACCA
TCACCGGACGCCAAAGGCAGATAAAAAAATAGGAATGGATTCCTCGTGTT
TCTGCAAACCAGAAAAACCACTATGAATGTGCCAGTGTATCATGTAGGTC
TTCTTGTTACATGACATCACTGCACAAAGAGAGAGGTGGGCGGAGCAAGG
TGCTTCTTCAAGAACCTACTTTGGCAATTAAAAGAAAAAAAAATCCACCC
ATGAGCACAGAGCCCTCACAACCTGATCACTTCAGGAAAGTTCAGACTCT
CAAAGGTATTGGCAGGGAACCAGATTCCTATCACAAACCTTAAAGGCTGT
GTTGAAACCCGTAGCAGCTCCTTCTCCTGAATAAAGGAGCTGTACTAAGT
AGTCCCTGGCNACCTTGACATTCAGTGGCTCCGTAAACTCATCCCAGTAA
ATCGTGAAA

NCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCATTTGAAAGTGTGTTCACAGGC
GTTTCACAGACTGGTGGGTGGCCTCTCAGGAGCTGGCCTTCCCACTCCTT
GTGGTTAGAGGGTTTGCTAGGGACGCTTCGAAGCATGGATTTGGACTGTC
TCGGGAGTCTACTGCCTGTTTCTGTGTAGCGAAGAAGACTCTCTTTTAGT
AATTATAGTTTGAAAAAAGGAAAAAAGAATAACCAAATTTGCCAGGCTTA
AGTGGAAGAATTCACCTCTTTCAATTGTAGCTTTGAAAATACAGCAGTAA
AATGTACCCGTTTAAAATGTCTACTTCAGTTGTGTGAAGCCTGCATGCTT
TGTTAGGAAGCATTCATCTTGTAAAACTGTAATTCTGTAACCAGTAACTA
ACCTTCACCCTCCAACCCTACCCTGCCCCAAGCCTTTGGTAAGTCTCATT
CTACTTCTTGCTTCTATGAATGTGATGAGATGCTTCACGGAAACAGAGCC
ATACAATATCTGTCTGTCCTCGACTGGCTTATTCCACTTAGCACAATGTC
CTTCAGGCCAAGGCAAAGCATGTATAGAGGCACCCACTGTTGATGGGCAT
TTGAGTTGTCTCCATCTCTGGGCTACTGGGAATACTAAGAATTTATTTAC
TTTTATTTATTTTTGGGATGCTAAGGATCAAGTCCCAGGCTTTGTGCATA
TTAGATAACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_k24.b1 MSMg01no424_k24.b1 CHROMAT_FILE:
MSMg01no424_k24.b1 PHD_FILE: MSMg01no424_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:42 2005
         (551 letters)



>mm_chr10_92789772_92790722
          Length = 951

 Score = 1052 bits (544), Expect = 0.0
 Identities = 547/548 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactttgtataccaggcttgcctcgaactcagaaatctgcctgtctctgcctcc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 ggaattcactttgtagaccaggcttgcctcgaactcagaaatctgcctgtctctgcctcc 792

                                                                       
Query: 64  caaatgctgggattaaaggcgtgtgccaccactgcctggcgccagatgagatctcaagca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 caaatgctgggattaaaggcgtgtgccaccactgcctggcgccagatgagatctcaagca 732

                                                                       
Query: 124 agcagccatccacaaatgcagtgacttggaaaagagtaacaaaaaacagaaagtggggag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 agcagccatccacaaatgcagtgacttggaaaagagtaacaaaaaacagaaagtggggag 672

                                                                       
Query: 184 gctggaggtataaggtccaaacctgccatttttggtgcctttgaacacaaatgaagatag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 gctggaggtataaggtccaaacctgccatttttggtgcctttgaacacaaatgaagatag 612

                                                                       
Query: 244 tttagctgtcctgggcctggggttttcatttattccatgtttgcttatttgctttaccct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tttagctgtcctgggcctggggttttcatttattccatgtttgcttatttgctttaccct 552

                                                                       
Query: 304 caccatcaccggacgccaaaggcagataaaaaaataggaatggattcctcgtgtttctgc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 caccatcaccggacgccaaaggcagataaaaaaataggaatggattcctcgtgtttctgc 492

                                                                       
Query: 364 aaaccagaaaaaccactatgaatgtgccagtgtatcatgtaggtcttcttgttacatgac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaaccagaaaaaccactatgaatgtgccagtgtatcatgtaggtcttcttgttacatgac 432

                                                                       
Query: 424 atcactgcacaaagagagaggtgggcggagcaaggtgcttcttcaagaacctactttggc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 atcactgcacaaagagagaggtgggcggagcaaggtgcttcttcaagaacctactttggc 372

                                                                       
Query: 484 aattaaaagaaaaaaaaatccacccatgagcacagagccctcacaacctgatcacttcag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aattaaaagaaaaaaaaatccacccatgagcacagagccctcacaacctgatcacttcag 312

                   
Query: 544 gaaagttc 551
           ||||||||
Sbjct: 311 gaaagttc 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space:   509081
Effective search space used:   509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no424_k24.g1 MSMg01no424_k24.g1 CHROMAT_FILE:
MSMg01no424_k24.g1 PHD_FILE: MSMg01no424_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:42 2005
         (556 letters)



>mm_chr10_92776093_92777048
          Length = 956

 Score = 1075 bits (556), Expect = 0.0
 Identities = 556/556 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttgaaagtgtgttcacaggcgtttcacagactggtgggtggcctctcaggagctggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttgaaagtgtgttcacaggcgtttcacagactggtgggtggcctctcaggagctggc 260

                                                                       
Query: 61  cttcccactccttgtggttagagggtttgctagggacgcttcgaagcatggatttggact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcccactccttgtggttagagggtttgctagggacgcttcgaagcatggatttggact 320

                                                                       
Query: 121 gtctcgggagtctactgcctgtttctgtgtagcgaagaagactctcttttagtaattata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctcgggagtctactgcctgtttctgtgtagcgaagaagactctcttttagtaattata 380

                                                                       
Query: 181 gtttgaaaaaaggaaaaaagaataaccaaatttgccaggcttaagtggaagaattcacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttgaaaaaaggaaaaaagaataaccaaatttgccaggcttaagtggaagaattcacct 440

                                                                       
Query: 241 ctttcaattgtagctttgaaaatacagcagtaaaatgtacccgtttaaaatgtctacttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttcaattgtagctttgaaaatacagcagtaaaatgtacccgtttaaaatgtctacttc 500

                                                                       
Query: 301 agttgtgtgaagcctgcatgctttgttaggaagcattcatcttgtaaaactgtaattctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttgtgtgaagcctgcatgctttgttaggaagcattcatcttgtaaaactgtaattctg 560

                                                                       
Query: 361 taaccagtaactaaccttcaccctccaaccctaccctgccccaagcctttggtaagtctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaccagtaactaaccttcaccctccaaccctaccctgccccaagcctttggtaagtctc 620

                                                                       
Query: 421 attctacttcttgcttctatgaatgtgatgagatgcttcacggaaacagagccatacaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attctacttcttgcttctatgaatgtgatgagatgcttcacggaaacagagccatacaat 680

                                                                       
Query: 481 atctgtctgtcctcgactggcttattccacttagcacaatgtccttcaggccaaggcaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atctgtctgtcctcgactggcttattccacttagcacaatgtccttcaggccaaggcaaa 740

                           
Query: 541 gcatgtatagaggcac 556
           ||||||||||||||||
Sbjct: 741 gcatgtatagaggcac 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |