Query= MSMg01no424_p05.b1 MSMg01no424_p05.b1 CHROMAT_FILE:
MSMg01no424_p05.b1 PHD_FILE: MSMg01no424_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:02 2005
(545 letters)
>mm_chr10_18617565_18618509
Length = 945
Score = 1031 bits (533), Expect = 0.0
Identities = 542/545 (99%)
Strand = Plus / Plus
Query: 1 cactggcttcttcctccttcctcttgggacagggtctggctacgtaccccagactggcct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 cactggcttcttcctccttcctcttgggacagggtctggctacgtaccccagactggcat 260
Query: 61 agaatggtaacctttctatcttagcctttgagtgtttggattacagtgataagcctccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatggtaacctttctatcttagcctttgagtgtttggattacagtgataagcctccat 320
Query: 121 ccctatcctagtcctgcttgcttcttgacagaggaagaaacgaagaccaagaaagaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctatcctagtcctgcttgcttcttgacagaggaagaaacgaagaccaagaaagaggtt 380
Query: 181 tggcgaggcttgaggtgaaggctcagactcgtgaggctacataaagcatggatttgcttc 240
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtgaggcgtgaggtgaaggctcagactcgtgaggctacataaagcatggatttgcttc 440
Query: 241 gtgcccatgttttctggaagcatctgcacctggatggatgctcctggactttcagtgaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcccatgttttctggaagcatctgcacctggatggatgctcctggactttcagtgaga 500
Query: 301 tttgttcctagtagagtcaggatattctgagacgcatggtacacacccagtcttctcagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttgttcctagtagagtcaggatattctgagacgcatggtacacacccagtcttctcagc 560
Query: 361 agagtgcgggttgcatccctggtgatatgaggctgccagggagggatagcttgctgtcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagtgcgggttgcatccctggtgatatgaggctgccagggagggatagcttgctgtcct 620
Query: 421 tacccacaatcagaaagagatcttaaccatattccattggttcaggaaaaggaacggact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tacccacaatcagaaagagatcttaaccatattccattggttcaggaaaaggaacggact 680
Query: 481 tcaaaaattgaagtgtggtccctactgattttatatggctttccagtcagtgtagtattg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcaaaaattgaagtgtggtccctactgattttatatggctttccagtcagtgtagtattg 740
Query: 541 gaaag 545
|||||
Sbjct: 741 gaaag 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no424_p05.g1 MSMg01no424_p05.g1 CHROMAT_FILE:
MSMg01no424_p05.g1 PHD_FILE: MSMg01no424_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:02 2005
(416 letters)
>mm_chr10_18751464_18752279
Length = 816
Score = 690 bits (357), Expect = 0.0
Identities = 395/415 (95%), Gaps = 15/415 (3%)
Strand = Plus / Minus
Query: 1 attataccctcctaacagattgtcctgactccctcaacatgttaagaaactgctacaaag 60
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 400 attataccctcctaacagattgccctgactccctcaatatgttaagaaactgctacaaag 341
Query: 61 taccatttaaaataattcaagggtttttttctgtgactcttacctaactaaacaactatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 taccatttaaaataattcaagggtttttttctgtgactcttacctaactaaacaactatt 281
Query: 121 ctcaatgattttcttcactgtatattatgtataaatttagcaaactttgtcttaaactat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ctcaatgattttcttcactgtatattatgtataaatttagcaaactttgtcttaaactat 221
Query: 181 gttgtacgacatagttcttcaaaaatattttaaattattaaaaatatatgtgtgtgtata 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 220 gttgtacgacatagttcttcaaaaatattttaaattattaaaaatata--------tat- 170
Query: 241 tatatatatatgtatatatatatatatatacacataccacaatcgatgtaaaaaagaaaa 300
|||||||||| |||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 169 tatatatata--tatacatatatatatat----ataccacaatcgatgtaaaaaagaaaa 116
Query: 301 cctgcaggaaagaaagaagaaagagggagggagagagagagagaaacacaaaaaaaaatc 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 115 cctgcaggaaagaaagaagaaagagggagggagagagagagagaaacataaaaaaaaatc 56
Query: 361 tgttcctttacttcaaatacttgttaggagccagacatggcagcatggggtgggg 415
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 55 tgttcctttacttcaaatacctgttaggagccagacatggcagcatggggtgggg 1
Score = 64.5 bits (33), Expect = 1e-14
Identities = 39/41 (95%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 231 tgtgtgtatatatatatatatgtatatatatatata-tata 270
|||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 135 tgtg-gtatatatatatatatgtatatatatatataatata 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space: 328449
Effective search space used: 328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
