Query= MSMg01no425_n13.b1 MSMg01no425_n13.b1 CHROMAT_FILE:
MSMg01no425_n13.b1 PHD_FILE: MSMg01no425_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:10 2005
(607 letters)
>mm_chr10_111042232_111043238
Length = 1007
Score = 938 bits (485), Expect = 0.0
Identities = 587/649 (90%), Gaps = 45/649 (6%)
Strand = Plus / Plus
Query: 3 gaattcatgtactattacgtccatgcatgcagttgggttgaagactccaagacttagagc 62
||||||||||||||| | |||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 203 gaattcatgtactatgaagtccattcatgcagttggggtgaagactccaagacttagagc 262
Query: 63 agttattgatgacatggataaatggtcacaaaagcatattgacacactggcgtcgggatg 122
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 263 agttattgatgacatggataaatggtcacaaaagcatatcgacacactggcgtagggatg 322
Query: 123 gaaaggtactcccaagaaattcttccctctgagaaagagaatcagagattggattttttt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gaaaggtactcccaagaaattcttccctctgagaaagagaatcagagattggattttttt 382
Query: 183 ttcttctttaagctttccagtatttctcaatttttcattatgaaaatgttttatttcaat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttcttctttaagctttccagtatttctcaatttttcattatgaaaatgttttatttcaat 442
Query: 243 attgttcttgctggacatgatgataggagcttttatttctcagcactggggaggcagagg 302
||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 443 attgttcttgctgtatatgatgataggagcttttaattc-cagcactggggaggcagagg 501
Query: 303 caggtggatctctatgagttacaagccaacctgatctacaaatcaagttctagtgagacc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 caggtggatctctatgagttacaagccaacctgatctacaaatcaagttctagtgagacc 561
Query: 363 ctatttaaagaacaaacaacaataacaacaagcaagtatgatatatatatgtatatatat 422
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 562 ctatttaaagaacaaacaacaatagcaacaagcaagtatgatatatatatatatatatat 621
Query: 423 --atgtatatatatatatat---------------------------------------- 440
||||||||||||||||||
Sbjct: 622 gtatgtatatatatatatatatatatatatacacacatatacatatatacatatatatat 681
Query: 441 --ttaacatgaagagaataaaagaaaacttggagacgttgctccaaacaaatatgtaaca 498
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 682 atttaacatgaagagaataaaagaaaacttggagacgttgccccaaacaaatatgtaaca 741
Query: 499 aaaaagatatgcaataaaaaaggctaagaaacaatgtatactggctagctttgtgtcaac 558
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 742 aaaacgatatgcaataaaaaaggctaagaaacaatgtatactggctagttttgtgtcaac 801
Query: 559 ttgacgcagctggagttatcacagagaaaggagcttccgttgaggaaat 607
||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 802 ttgacacagctggagttatcacagagaaaggagcttcatttgaggaaat 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_n13.g1 MSMg01no425_n13.g1 CHROMAT_FILE:
MSMg01no425_n13.g1 PHD_FILE: MSMg01no425_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:11 2005
(489 letters)
>mm_chr10_111170483_111171371
Length = 889
Score = 671 bits (347), Expect = 0.0
Identities = 376/389 (96%), Gaps = 8/389 (2%)
Strand = Plus / Minus
Query: 1 ttggaaccttggctgtttatcatcgccattgattctagtgcttactgtagcttgcactgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttggaaccttggctgtttatcatcgccattgattctagtgcttactgtagcttgcactgg 330
Query: 61 attgtgcctctggtaggcattcagaaaggttacttgttgttattccttacttttctctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 attgtgcctctggtaggcattcagaaaggttacttgttgttattccttacttttctctct 270
Query: 121 acggcctctttcactttcctaaagagactatccagaactaagatgacctttactttaaga 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 269 acggcctctttcactttcctaaagcgactatccagaactaagatgacctttactttaaga 210
Query: 181 ccagaagggagctgggcagtggtggtgcacgcctttaatcccagcacttgggaggcagag 240
||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||
Sbjct: 209 ccagaagggagctgggcagtggtggcgcacgcctttaatcccagcacttaggagacagag 150
Query: 241 gcaggcagatttctgagttcgaggccagcctggtctacagagtaagttccaggacagcca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 gcaggcagatttctgagttcgaggccagcctggtctacagagtaagttccaggacagcca 90
Query: 301 gagctatacagagaaaccctgtctcaac-----cccccccaaa-caacaaaaaacaacaa 354
| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 89 gggctatacagagaaaccctgtctcaacgcccccccccccaaaacaacaaaaaacaacaa 30
Query: 355 caaaaacaaa--caaacaaacaaacaaaa 381
|||||||||| |||||||||||||||||
Sbjct: 29 caaaaacaaaaacaaacaaacaaacaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
