BAC Information

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BAC

Clone NameMSMg01-425O08
Chromosome10 (Build37)
Map Location 57,165,895 - 57,166,218
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668347, LOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363
Downstream geneHsf2, Serinc1, LOC211619, LOC668374, Pkib, Ppia-ps10_506.1, Fabp7, Smpdl3a, EG664783, 4933403O03Rik, EG245263, Gcc2, Lims1, Ranbp2, 6230424H07Rik, LOC100038981, Edar, LOC624335
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425O08.T7 (MSMg01no425_o08.b1)MSMg01-425O08.TJ (MSMg01no425_o08.g1)
ACCAG519469AG519470
length733781
length of high quality
(start - end)
249 (65 - 313)324 (70 - 393)
definitionCHROMAT_FILE: MSMg01no425_o08.b1 PHD_FILE: MSMg01no425_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:14 2005CHROMAT_FILE: MSMg01no425_o08.g1 PHD_FILE: MSMg01no425_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATGCGCGGAATTCAGA
ATTGTTTCCTTTGTATTTATGTGTATGTTCCTGTCTACTTAGGTACATGT
TATGCAGATGCTCACGGAGGCCAGAAGATGGTGTCAAATGTGCTGGGGCT
GGAGTTACAGATGACTGGGAGCTGAGGTATGAGTGTGAGAATCTGAATTC
AGGTCCTCTGGAAGAGTAAGTGTTCTTAAACCTCTGAGCCATCTATCCAG
CCCTAAATTTCAGTCATGATAGAGAACAGAAGACAAATAAGGCTCTTATA
TTCTACACTATATTTTTTTATTTGTACTTCATCTTGTAGAAAGGAATCTG
TCTGCTAAATACTATAAGCAATCCAGTACATCACACGACTGTTTGCTCTG
AGGGATGCCAGGCTCACGAGCCTTGGTGTACACAAAGCCCCTCTACAGAC
ATGTGAAGAAAATGCAGGAGGCAGAAGAAGAGAAGCACCAACACCATGCA
TATCAGACACAGGACTGACCACCCGATCAGAGGGGCATGATAACCTCTGA
CCTCACTGTGTGTCGGTGTCGATTCTCTATCATTTAGGCTAACTGGAGAC
TGTTGTACGAAAGCCTGTCTTTTTATAATGTTATGTCCGTTAGCTTCCCT
TATTGTTTGCGTCTCAGGACCGCCATGTATCCCCTTTCTCCTTTTCTCTT
TCTTTGTCCTCTTCCCTTTTTTCCCCCTCCTCN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTCCCTGCTCATTTAGCCTTGCCTGATCCA
TCACTTTCTGAAGGGTTTTGGCATTTCTAGAAAGGAGTTTAGATTGTTTG
TGATGCCCGGTCAGGAGATAAAATGGAGACGTGGGGAGGATAGATGGTCG
GCTAATTTCATTCTGTGAGTCAGAAATCATGGGCCAGATTAGGAGCAAAG
ATCAGGTGTGTAGGGAAATGAAGACAGAGAAGGAAGCATGAGGAAAGAAG
AGAGACCAGGGTTTTGGTGATTAGAAACCAGGAGATTGAGGGCTGGAGAG
ATGGCTCAGTGGGTAAGAGCACTGGTTACTCCCTGAGGTCCTGAGTTTAA
GTCCCAGCAACAGCATGGTGGCTCACAACTATCTGTAATGGGATCTGATG
CCCTCTTCTGGTGTGTCTGAAGACTGCCCTTGCATACTCCCCTCACTTAA
CCTACTAAAAACATCTTTATCAACTGACTCCGATTCTGTATTTATTCTTT
TTTGATACTTGGTTCCCAGGCCCTTCGTCTTTTTACTCCTTATTTTTTTT
TTTTCCTCCCCTTTCCCTCCATTTTACCCTCTATTTCTTTTTTTCCTCTC
TATATCTTTCCCTTTTTCTCATCCCTTTTCTCCTCCCTCCTTTCACCTCC
TATCTCTTCTTCTTTTTTTTCTTTACCGCCTTCCTCTATTTCCCTCTCTT
CTTTTCTCCCCCTTCTTTTCCTTCATCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_o08.g1 MSMg01no425_o08.g1 CHROMAT_FILE:
MSMg01no425_o08.g1 PHD_FILE: MSMg01no425_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:14 2005
         (324 letters)



>mm_chr10_57165750_57166473
          Length = 724

 Score =  534 bits (276), Expect = e-156
 Identities = 312/324 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttccctgctcatttagccttgcctgatccatcactttctgaagggttttggcatttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tttccctgctcatttagccttgcctgatccatcactttctgaagggttttggcatttcta 410

                                                                       
Query: 61  gaaaggagtttagattgtttgtgatgcccggtcaggagataaaatggagacgtggggagg 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 409 gaaaggagtttagattgtttgtgatgccaggtcaggagataaaatggagacgtggggagg 350

                                                                       
Query: 121 atagatggtcggctaatttcattctgtgagtcagaaatcatgggccagattaggagcaaa 180
           |||||||||||||| |||||||||||||||| ||||||||||| |||| |||||||||||
Sbjct: 349 atagatggtcggctgatttcattctgtgagttagaaatcatggaccagtttaggagcaaa 290

                                                                       
Query: 181 gatcaggtgtgtagggaaatgaagacagagaaggaagcatgaggaaagaagagagaccag 240
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 289 gatcaggtgtggagggaaatgaagacagagaaggaagcatgaggaaagaagagagagcag 230

                                                                       
Query: 241 ggttttggtgattagaaaccaggagattgagggctggagagatggctcagtgggtaagag 300
           |||||||| |||||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct: 229 ggttttggggattagaaaccaggagattgggggctagtgagatggctcagtgggtaagag 170

                                   
Query: 301 cactggttactccctgaggtcctg 324
           ||||||||||||| ||||||||||
Sbjct: 169 cactggttactccttgaggtcctg 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)