BAC Information

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BAC

Clone NameMSMg01-426A23
Chromosome10 (Build37)
Map Location 123,321,188 - 123,321,500
singlet/doubletsinglet
Overlap genenone
Upstream genePpm1h, D630033A02Rik, Mon2, Usp15, LOC100042958, AI851790
Downstream gene4930503E24Rik, LOC671416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426A23.T7 (MSMg01no426_a23.b1)MSMg01-426A23.TJ (MSMg01no426_a23.g1)
ACCAG519593AG519594
length772744
length of high quality
(start - end)		47 (103 - 149)452 (78 - 529)
definitionCHROMAT_FILE: MSMg01no426_a23.b1 PHD_FILE: MSMg01no426_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:27 2005CHROMAT_FILE: MSMg01no426_a23.g1 PHD_FILE: MSMg01no426_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNTTAATTTNNNNNCNNTAAACAAATNNTTATATTTCANANNANCCGCG
NNAANCCANGNNATTTCCCANGAAATANAANAGTAATGAANTTGAAATCC
ACAAGTAAATGGNCTTTTTTAANNAATTAATTGGNTATTTTATTTATTTA
TATTTTCAAATGTGNCTCCCTTCAAGGNNCCTTTTNNNANNCCTTTTTTT
CTTGCCCTTTTCTTTTAAAAAGGTCTGGCAGGGTAGGAGAGTGGGGGTGG
GGGTGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGTGTACTATANNNNNNN
CCCCNNNNNNCNNTTNNNNNNNNNCCCCAAAACCCNNNCNCCCNNNNNNN
NCCNCCCTTTTNNNNNTTNNNNCCCCCCCNNNNTCNNTNNNNNNNNNNNN
NCAAAAANCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTNTNNCCTNNNCNNNNNNNCNNNNNNNNNTNNNNNNCTTNNNNNC
NNNNNNNNNNTNNNTTTTTTTCCTTTTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTTNNNNNNNTTNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNN
NNNNNCANNNNNTTTNTNTTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTCCNNCCTTNNNNNNCCNNNNNNNTTNNNT
TNNCTTTCCCCCNNNNTTTTTNNTCNTTCNNTNCTNTTNNCCTCCCCCTT
TTTTTTTTTTTTTTTTGTGGGG

NCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCACCACCACCCCATTTTAAGTGC
TATCTTTTGAAATAAGTGACATTTTAGGAAACACGGTGTCTGTGGTGGCT
TGGATTAAAAATGTTCCCCATACACTCACATACTTGAATGCTTTGACTTC
AGTCAGTAATGCTATCTGGGTAGGAAATAGAGCTTTTAGGATGTGGAGCC
TGGATGGGAGAAGTTCATGACTGTGGGCAGGCTTCGGGAGTTCAGAGCAT
CATCCCACTTTCACTGACCTTTCTCTGCTTCTTGCAAATGGATGGAAATG
TGACTTCTCAGCCTTGTACTGCTACTGTTACTGTAGATGTTTGTTGCCAT
AGCTCCCTGGCATGATAAATGCTCAACTTCCTTTTGGTTATGGTAGTTTA
TTACACCAACAGAAATTTAACAGAGAAGTTTATACTGAGAGCGAAGTGCC
CTTTGAAGACTCTAACCACATTGGCTTTGGAAAGGATGTGGAAAACTTTG
AACTTTGTCTAGCCTAGAAAAAGTAAATGGTGTAAGCAGAACATAATGGG
GCCATCTAGTCCGAGCTTGGAAGACAGTCATGTTGAGAGCCTAAAGGTGG
TGGAGAACCGGCTTTTAAGGGTCCCCAAAAAAAGGGGATCTGCTATAAAA
CTGTTCCGACCATTTGAAGAAATTTTTTAAAATCCCCCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_a23.g1 MSMg01no426_a23.g1 CHROMAT_FILE:
MSMg01no426_a23.g1 PHD_FILE: MSMg01no426_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:27 2005
         (452 letters)



>mm_chr10_123320649_123321500
          Length = 852

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Minus

                                                                       
Query: 140 tgggtaggaaatagagcttttaggatgtggagcctggatgggagaagttcatgactgtgg 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 tgggtaggaaatagagcttttaggatgtggagcctggatgggagaagttcatgactgtgg 793

                                                                       
Query: 200 gcaggcttcgggagttcagagcatcatcccactttcactgacctttctctgcttcttgca 259
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 792 gcaggcttcgggagttcagagcatcatccctctttcactgacctttctctgcttcttgca 733

                                                                       
Query: 260 aatggatggaaatgtgacttctcagccttgtactgctactgttactgtagatgtttgttg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 aatggatggaaatgtgacttctcagccttgtactgctactgttactgtagatgtttgttg 673

                                                                       
Query: 320 ccatagctccctggcatgataaatgctcaacttccttttggttatggtagtttattacac 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 672 ccatagctccctggcatgataaatgctcaacttccttttggttatggtagtttcttacac 613

                                                                       
Query: 380 caacagaaatttaacagagaagtttatactgagagcgaagtgccctttgaagactctaac 439
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 612 caacagaaatttaacagagaagtttatactgagattgaagtgccctttgaagactctaac 553

                        
Query: 440 cacattggctttg 452
           |||||||||||||
Sbjct: 552 cacattggctttg 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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