BAC Information

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BAC

Clone NameMSMg01-426I04
Chromosome10 (Build37)
Map Location 98,098,764 - 98,099,142
singlet/doubletsinglet
Overlap genenone
Upstream geneEpyc, 4921510H08Rik, EG667438
Downstream geneEG432494, Atp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426I04.T7 (MSMg01no426_i04.b1)MSMg01-426I04.TJ (MSMg01no426_i04.g1)
ACCAG519933AG519934
length797924
length of high quality
(start - end)
436 (66 - 501)52 (68 - 119)
definitionCHROMAT_FILE: MSMg01no426_i04.b1 PHD_FILE: MSMg01no426_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:04 2005CHROMAT_FILE: MSMg01no426_i04.g1 PHD_FILE: MSMg01no426_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATT
CTGAATACAGAATGCTAAAGAACCTGTTTTATTTGGAAACACATGTGATT
AAAACAAACAAACAAACAAACAAACAAACAAATCACATCGAAGTATTATG
AGTCTTAGGTTCCCCTACCCTCAACTGGATACTCAGATATTTCTGGGATC
AAGTTCAGGCCTAGGACCTAAGATCTTGAGACTTTACAAGCCAGTGATTG
TGCCTAAGCCTTGACTTATGCTTCTGTAAAATGGGTATAAGTAGCCTATC
CCTACTGGACTTGTGTGAATTAGGTCATAAAAGGGGCACAGGACATTGAT
CATAATTGGTACTCAATGCTGTTCTCTTGAGGAGGGACTGTTAATCCCTT
TCTAGCCTCTGTGCCTAAAATTGCTGAGACCGTCAGGCTTCAGGCATCGA
TGTGATGGATTGCCTAGCTTCTCAGGACTCTCTCAGAGAATAAAACTGTC
TGCAATCACAGGTATATTTGACCAGGTTTTATTCACCAGGATTTCGGTGT
ACCCAACACCCTAACTGTCTCCTGCTGGGCACTCAGTGGGCATCTGTTTG
CTTCACCTGGCGTGGAATGGCCCTCCGCGTAACTGGGAACGTTGTTTTTG
TCTACCAATGGAAGCGACACAAGTGGTTTAATCTCTGCCTCCCCGTTGAA
TTAGAATAACAGTACATGTTTGCGGTCCGGCTGGTCTTTCCTCCCTCCCT
TCGCTCATTTTCGTATTATCGTTTAAACACTCTCCTCCCTGTTCTTG
AGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTCATGNGAACCTTCAGTTCCTTTTTTATTTT
ATTTGTGTGTGTGTGTGTGTGTGTGTGTGACCTCNTTTCCGTATTTTCTC
CCTTCACCCCGCTTCCTCCGCCGTTTATTCTCCTTCACAGACGACAACAA
ACACTCCCACACCTCCTCATTCGCCTTGCCTTCCCTTTCTACCATCCCAT
CCACTCTATTTAATTTTAAAATCACAAATATTTCTTTACAACCACCCTCC
CTACTTTTTCCGTCATAACCTACTAATTTTTTTTTTTTTAAAACACCTCC
CCATTATCACCCTTATCTTAAACACACCAATTTTTACCTCCTTTTCCTCT
ACACATCTTATCCCTATATTATTTCTTTATAATTACATATCAAATATTTT
TACACACAATACTTTCCCCTAATTCTCATTACTTTTCTACCAACACCACT
ATTTTCTACTTATTTACCTTACCCTCACATACTATTATTTATTCTTATAT
ATACCCTTCCCCTCATTTCTCTCTAATACCAATTTATTCCCATACTTCCA
CCCATTTTATCTCCCCTACTACTTATCACACTTATGTACCCCCACTATAC
CCCTTTTATACTTTTTCTTCTATATATTCCACATTAATTTAAAACATTAT
TATTAACTCAAAACATATCACCATTTTTCTACTCAATAATATTATTTTAT
ATTAAACCCAATACTCTCTCATCTATTACATACAACTCATCTTTACATAT
TACTATTACACTCTACACCACCCTCACCTATATAACACCCTCTCTAACAA
TTAACCACATACTCTATTCCTACTCTCTAACCCCCTATATTATTTTCCAC
CTATTTATTACATTCTTACCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_i04.b1 MSMg01no426_i04.b1 CHROMAT_FILE:
MSMg01no426_i04.b1 PHD_FILE: MSMg01no426_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:04 2005
         (436 letters)



>mm_chr10_98098307_98099142
          Length = 836

 Score =  733 bits (379), Expect = 0.0
 Identities = 379/379 (100%)
 Strand = Plus / Minus

                                                                       
Query: 58  aacaaacaaatcacatcgaagtattatgagtcttaggttcccctaccctcaactggatac 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 aacaaacaaatcacatcgaagtattatgagtcttaggttcccctaccctcaactggatac 777

                                                                       
Query: 118 tcagatatttctgggatcaagttcaggcctaggacctaagatcttgagactttacaagcc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tcagatatttctgggatcaagttcaggcctaggacctaagatcttgagactttacaagcc 717

                                                                       
Query: 178 agtgattgtgcctaagccttgacttatgcttctgtaaaatgggtataagtagcctatccc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 agtgattgtgcctaagccttgacttatgcttctgtaaaatgggtataagtagcctatccc 657

                                                                       
Query: 238 tactggacttgtgtgaattaggtcataaaaggggcacaggacattgatcataattggtac 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tactggacttgtgtgaattaggtcataaaaggggcacaggacattgatcataattggtac 597

                                                                       
Query: 298 tcaatgctgttctcttgaggagggactgttaatccctttctagcctctgtgcctaaaatt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tcaatgctgttctcttgaggagggactgttaatccctttctagcctctgtgcctaaaatt 537

                                                                       
Query: 358 gctgagaccgtcaggcttcaggcatcgatgtgatggattgcctagcttctcaggactctc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gctgagaccgtcaggcttcaggcatcgatgtgatggattgcctagcttctcaggactctc 477

                              
Query: 418 tcagagaataaaactgtct 436
           |||||||||||||||||||
Sbjct: 476 tcagagaataaaactgtct 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)