BAC Information

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BAC

Clone NameMSMg01-426J15
Chromosome10 (Build37)
Map Location 20,955,129 - 20,955,488
singlet/doubletsinglet
Overlap genenone
Upstream geneMtap7, Bclaf1, 2610016C23Rik, LOC382344, Pde7b, LOC667202, Ahi1, Myb
Downstream geneLOC100039870, Hbs1l, Aldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426J15.T7 (MSMg01no426_j15.b1)MSMg01-426J15.TJ (MSMg01no426_j15.g1)
ACCAG520002AG520003
length820875
length of high quality
(start - end)
362 (65 - 426)290 (71 - 360)
definitionCHROMAT_FILE: MSMg01no426_j15.b1 PHD_FILE: MSMg01no426_j15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:12 2005CHROMAT_FILE: MSMg01no426_j15.g1 PHD_FILE: MSMg01no426_j15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTCCTGTTGCTGATCTGCAAGTCTTCTCTCCGTTCTGTGGGTTGACTTT
TGACTCTGCTGAACATGTTCTTTGATGCACAGAAGTTTGTGCTTTGATGA
AATCCAACTGAACTACTTGTTCTTGCAGCCCATGCTTTCATATTAAATCT
CAAACCATTTCCAAGTCTACTCTCACCAGGATAAGTGTCCCCAGGGCTGT
ACCTTGGTGACACAGTGACCCTGGTGGCTGTGAGGCTGGTCTTCCCACTG
CCCACACCGTCACTTCCTGATTTCTGCTACACTGGTACATGAGATGCTTT
TTCTTAAACAACTTGAGGCACCTGCCCTTTGAAGTGGTGTCAGCTGCAGA
TGTGACACCAGCATCACATGACATCTGTTTTTAGTTAGCGGAAAATGCTG
TAATAGTTCACTTATTTGCCTCCCCGCCAGTAAATCCCTTAACTTTTTCA
GTTTCTCACAGGGGAATAACTTCTCTTTTCCTCCTCTTACTGCCTTCCTT
TCTTATACCTTAAATTATACAATCCCTTCTCTTACCCTTATAGCGTCAAC
TAAATTAAATCTGCATATCTTCTAATCTATTTTCTTGTTTATTCTCATAT
TACTTTGTCTGTATCTCACCCTATCTCCTCTCTTTTGTTTTTAACCTAAC
CCCCCCCATCCTTATATCATTCTTCTCTATCAATCTTTCTTCTTTTTTTT
TCTACCAATCTCCCCCTTCTTCACCAACCCTCTATTCTCATCATTCATTT
CCACTTCTCTCACTCCCTCT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAATAAGTAATAGATGTTGTAGAGCAAGGAA
GCAGTGCGAGCAGAGATCATAGGAGGAGCACACACAGTCTGGCTGAAACA
GAGGTCACAGGAGGAGCACACACAGTCTGGCTGAAACAGAGGTCATAGGA
GGAGCACACACAGTCTGGCTAAGCAGAGGTCACAGGAGGAGCACACACAG
TCTGGCTAAGCAGAGGTCACAGGAGGAGCACACACAGTCTGGCTGAGCAG
AGGTCACAGGAGGAGCACACACTGTCTGGCTGAAGCAGAGGTCACAGGAG
GAGCGCACAGTCTGGCTGAAGCAGAGGTCACAGGAGGAGCACACACACAG
TCTGGCTGAACCACACCCCACAGGTAGGAGCACACTCAGTCTGCCTTGAA
TCTGTAGGTCATATTCATTGATCCATCCTCCTGTCTGCCTTGATACCATA
ATCCCCCAGTATCTATCTCCCTCTCGTTCTCGTCCGATCCTCTTCTTCCT
TCTTTTACTGCCCTGTATTCTCTCCTGCCTTTTTCTCTTCTGCCCCTTAC
TCTTAATCTCTTTTCTCTCACTTATCGTCTTCATCCTTACTTCTTCCTAG
CTAATTCTTCTTTCTGCTTTTCGGCCTCCCCATTTCCCTCCCTTTCTTCG
ACGGATTGCTCCTGCTTCTCTTCTTCCTTCCGCACACTCTCCATCATGCA
TAAATTGTACTACATTCGCCCTCGTTCCTCTCTTTCTTTCTTACCTATAT
GCCATTTCTTTTCTCACACTGCTTCTTTTCCTTCTATCTCATATACTCCC
CCTCTCTTTATCTCCATTACTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_j15.b1 MSMg01no426_j15.b1 CHROMAT_FILE:
MSMg01no426_j15.b1 PHD_FILE: MSMg01no426_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:12 2005
         (362 letters)



>mm_chr10_20954761_20955522
          Length = 762

 Score =  634 bits (328), Expect = 0.0
 Identities = 352/360 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   tgcaagtcttctctccgttctgtgggttgacttttgactctgctgaacatgttctttgat 62
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 tgcaagttttctctccgttctgtgggttgacttttgactctgctgaacatgttctttgat 669

                                                                       
Query: 63  gcacagaagtttgtgctttgatgaaatccaactgaactacttgttcttgcagcccatgct 122
           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 668 gcacagaagtttgtgccttgatgaaatccaacttaactacttgttcttgcagcccatgct 609

                                                                       
Query: 123 ttcatattaaatctcaaaccatttccaagtctactctcaccaggataagtgtccccaggg 182
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ttgatattaaatctcaaaccatttccaagtctactctcaccaggataagtgtccccaggg 549

                                                                       
Query: 183 ctgtaccttggtgacacagtgaccctggtggctgtgaggctggtcttcccactgcccaca 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ctgtaccttggtgacacagtgaccctggtggctgtgaggctggtcttcccactgcccaca 489

                                                                       
Query: 243 ccgtcacttcctgatttctgctacactggtacatgagatgctttttcttaaacaacttga 302
           || |||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccatcacttcctgaaggctgctacactggtacatgagatgctttttcttaaacaacttga 429

                                                                       
Query: 303 ggcacctgccctttgaagtggtgtcagctgcagatgtgacaccagcatcacatgacatct 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggcacctgccctttgaagtggtgtcagctgcagatgtgacaccagcatcacatgacatct 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)