BAC Information

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BAC

Clone NameMSMg01-428E03
Chromosome10 (Build37)
Map Location 49,196,124 - 49,196,280
singlet/doubletsinglet
Overlap geneGrik2
Upstream geneLOC546562, LOC100041689
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428E03.T7 (MSMg01no428_e03.b1)MSMg01-428E03.TJ (MSMg01no428_e03.g1)
ACCAG521265AG521266
length729772
length of high quality
(start - end)
620 (55 - 674)161 (83 - 243)
definitionCHROMAT_FILE: MSMg01no428_e03.b1 PHD_FILE: MSMg01no428_e03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:23 2005CHROMAT_FILE: MSMg01no428_e03.g1 PHD_FILE: MSMg01no428_e03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNAAGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCCATAAATTCCTTCTTTTTAATAGCTGAGTAGTACTC
CATTGTGTAAATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGAC
ATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAAC
ATAGTGGAGCATGTGTCCTTCTTACCGGTTGGGACATCTTCTGGATATAT
GCCCAGGAGAGGTATTGCGGGATCCTCCAGTAGTACTATGTCCAATTTTC
TGAGGAACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCC
CACCAAAAATGGAGGAGTGTTCCCCTTTCTCCACATCCTCGCCAGCATCT
GCTGTCACCTGAGTTTTTGATCTTAGCCATTCTGACTGGAGTGAAGTGGA
ATCTCAGGGTTGTTTTGATTTGCATGTCCCTGATGATTAAGGATGTTGAA
CATTTTTTCAGGTGCTTCTCAGCTATTCGGTATTCCTCGGGTGAAAATTC
TTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGG
AGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCC
GATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTTGGGGGCTTTTTGT
CTTATTGACGGGGCCCTTTGCTTTTGAAA
TTCTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTACTTCGGTATTTTT
CTAGCTTTTAAGGAACCATTACATATCTTCTAGATTTCAGTAGAAATATA
ACTATTCCATGATGATAAGTTTTACTTTACTTAATGAATCTTTTAATGTG
TTAGACATAGCATGTTTTTTATTTCTAACCCTTAAACATGTNNNTAGAAG
TGGNNAAAAANCCAAAAACAAATACCAATAAAGGNNNNNCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNGNNNNNNNGNNNNNNNNNGNNNNNNNNNNNNNN
NNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNN
GNNNNNNNNNNNNNNNNNNGGNGNNNNNNNGNNGNNNNNGGNGNNNGGGN
NNNNNNNNNNNNNNNNNGNNNNNNNGGGNNNNNNNNNGGGGNGGGGGGNG
NGGGGGGGGGGNGNGNNNNNTTTGGGGGGGTGGGGGGGGNNNNGNGNNNG
GGGGGGGGNNNTTGGNTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_e03.g1 MSMg01no428_e03.g1 CHROMAT_FILE:
MSMg01no428_e03.g1 PHD_FILE: MSMg01no428_e03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:23 2005
         (161 letters)



>mm_chr10_49195924_49196482
          Length = 559

 Score =  288 bits (149), Expect = 1e-82
 Identities = 156/159 (98%), Gaps = 2/159 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttacttcggtatttttctagcttttaaggaaccattacatatcttctagatttcagta 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 atttacttcggtatttttctagcttttaaggaaccattacatatcatctagatttcagta 260

                                                                       
Query: 61  gaaatataactattccatgatgataagttttactttacttaatgaatcttttaatgtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatataactattccatgatgataagttttactttacttaatgaatcttttaatgtgtt 320

                                                  
Query: 121 agacatagcatgttttttatttctaacccttaaacatgt 159
           ||||||||||||||||||  |||||||||||||||||||
Sbjct: 321 agacatagcatgtttttt--ttctaacccttaaacatgt 357


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 559
Length adjustment: 8
Effective length of query: 153
Effective length of database: 551
Effective search space:    84303
Effective search space used:    84303
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)