BAC Information

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BAC

Clone NameMSMg01-428E09
Chromosome10 (Build37)
Map Location 113,046,353 - 113,046,469
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042639, 4921506J03Rik, LOC100042655
Downstream geneLOC100042666, Trhde
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428E09.T7 (MSMg01no428_e09.b1)MSMg01-428E09.TJ (MSMg01no428_e09.g1)
ACCAG521277AG521278
length793770
length of high quality
(start - end)
245 (74 - 318)117 (131 - 247)
definitionCHROMAT_FILE: MSMg01no428_e09.b1 PHD_FILE: MSMg01no428_e09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:24 2005CHROMAT_FILE: MSMg01no428_e09.g1 PHD_FILE: MSMg01no428_e09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXAAACAAGAGAGGATCC
GCGGAATTCCTTGTTCCCTACAAAATTTCTTTACCTGATAATATTTTTAA
TATATAAAACAATGACACAAGGTGTAACAAGAGAAAAACGTTTAATTTTT
TTTTATTCTTTAACTTTTTATCCAGACTTTATCCTCCTCGCGGTCCACCC
ACCCACTGTTCCACATCCCACACCTACTGCCCATGGCGAGTCTCCAAGAG
CACCCCTACCCCACCAGAGGTCCCCACTCCCTGGAGCTCCAAGCCTCTAG
AGAGTTAGGTGCATCTTTTTTTTATTGAGGCTTACTCATTATCAAAACTG
ATAGGTTAGTATTACTCCTCCATACTACCAGATCTAATATGTTTATCCCA
TCCCATTATCAATCTACCCTGGTTAAAGATTTAATATTTAATCTTATCAT
ATCCTCCCTATATTTAAGTTCATCCTATCTATTTATTACTCGATATTTGC
CCCTCTTTCCTTATGTATTCATCTGTCCATCCTCCGTTTATTGCTTTTAC
GCACGTCGCCTTCCCTAATTCTTGTGATCCTGCACATTTCTGGTTTTTTT
TTCCCTCTTTATTTATATTTTACTGTCCCTCATCATATTGTTTTTCTTGC
TTCGACCTCTCATTTTTATTACCCTATTATTTTCCCCCCCTCTCCTTCCA
CTTATTCTTTTCACTCACATCTTTTTTTCTCTCTCGCGCTCCTATTCCCC
GTCCCTTTCCCTCTTTCTTTTTTCTCCCCCCTTTTTTTCTTCG
AACGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTTCTCGCGAAATTCAGTGATGGGGTAGAGTTTTATAAC
TCAATAGAGAGACTTTTAATTAACATATCAATAATTTAAATAATGATATT
ATTTTGTAGTTAAAATGCACCCAATTATATCAAAATGTGGCATTCTAAAA
TTAAAGTTCAAGTTTTGGCTGTATTTAGTGACTGGAACTTTTTATAAAAA
CTTTCTTACGACAATATTGATACGGAATGGTAGAAAGTGCCTCAGCAGAG
CATTCCTCCTCTGCGATTTTTTTTTTGTCAGACGCGAGAAATATTCAAGT
CTTGCAAAGGATATTTTTAATATAAGATTTATTATTCCTGGCATTGAACA
TTTTGACAGTAAGTCTTTACATTATAGTTCCATAATGCTAAGTATCAATT
TCTAATATTGAATCAAATAATCTTCCATCTGATCCCTAAAACTTTATATT
TCAACACACGTCCCACTGCCCCGTTGTTGTTCTCATCGCCTTTTTTTCCA
TCACTTGACTAGCCATATCCCTTTTTTATTTCTTGATCTTCACCCCCTTC
CTTTACTTCCCATTCGTTTTTTTTTTATTCCCTTCCTTTATACATTTTTA
TATCCCGCTCTCCTATTTCTCTTAATTTTTTTATTATTTACTCTAACACC
CCCCTCACACCCTCTTTCCCTTTTTTTTGTTTCTACCTCACTTTTTTTCC
CTTTATTTTTTCCTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_e09.g1 MSMg01no428_e09.g1 CHROMAT_FILE:
MSMg01no428_e09.g1 PHD_FILE: MSMg01no428_e09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:24 2005
         (117 letters)



>mm_chr10_113046153_113046669
          Length = 517

 Score =  211 bits (109), Expect = 1e-59
 Identities = 115/117 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatttaaataatgatattattttgtagttaaaatgcacccaattatatcaaaatgtgg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 ataatttaaataatgatattattttgtagttaaaatgtacccaattatatcaaaatgtgg 260

                                                                    
Query: 61  cattctaaaattaaagttcaagttttggctgtatttagtgactggaactttttataa 117
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 cattctaaaattaaagttcaagttttggctgtatttagtgactggaattttttataa 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 517
Length adjustment: 8
Effective length of query: 109
Effective length of database: 509
Effective search space:    55481
Effective search space used:    55481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)