BAC Information

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BAC

Clone NameMSMg01-428I22
Chromosome10 (Build37)
Map Location 108,236,501 - 108,236,952
singlet/doubletsinglet
Overlap geneSyt1
Upstream geneEG628870, Ppp1r12a, Pawr, EG667814, EG368203
Downstream geneNav3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428I22.T7 (MSMg01no428_i22.b1)MSMg01-428I22.TJ (MSMg01no428_i22.g1)
ACCAG521495AG521496
length747753
length of high quality
(start - end)
454 (73 - 526)521 (75 - 595)
definitionCHROMAT_FILE: MSMg01no428_i22.b1 PHD_FILE: MSMg01no428_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:46 2005CHROMAT_FILE: MSMg01no428_i22.g1 PHD_FILE: MSMg01no428_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAA
TTCCAGTACCTTTCATCTCTAATGTCCTTCTCTCTTGCTTTTTCTTCTTT
CACTGGTCTACCTAAGCAAACCAAATCCTTGTTCTTTTGCAATATAATAT
TAAATTCACCAGTCTCTTTATTACTAACATGTCTAAAATGCAAACTGCAT
TCCAATGGGGAGTTGTATTATTATTATTATTGCTATTATTACATCTTTTT
TTTTTTACACTCCAGTCATATTTGTTTCTGTTTCCTCATCAAGTATTTTC
ACAGCCACAATTTCTTTACTTTATCCACATTCTTACGACCCATTCTTTTC
TAGTTCTGCCTGGTAAATCTTAAAAACAAATCTAGATTCTGTTCATTTCT
CTCCAACCCCTTACATGTGCACACACTGGAACAACCCCTTACATGTATAC
ACCCATCTGGTCCTAAGCCACAAGTATGTTAGTGAGCTAACCTCCCTCCC
TCCCTTTCCCTACACATTTTCAATGTGTTTAGAATAAGAAACTCTTTTAA
AGTGCCAGTTAGATCATGCTGCTGTTTGGTCTATATTTCTAAGTTCTTAC
CATGGCTACGAATCCCCATGCAATCTGTGCCTTTCTCTTCTGCAGCTATT
CTGTCAGTATCACTTATTCTTACTCCCTGCCCCACTCCCCCAGGTCATTT
CTCTTCTACTACCCCTATAAACCATGAAATGAATCCTTCCTCCTGCT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTCTATCTATACCCCATTTTG
TAATTGAGGTATTTTTTTCTTGATATCAATTTTAGTCAGATTTTTAAAAA
TATATTCTAGATATTAGCCCTCAATCAGAATTTAATTGGTAAATATCTCT
TCCCTTTCTGTAGACTGCTGCTTTTTCCAAATGATGAGGTCTTTTGCCAT
GCAAAAGATTTTCAATTTCATGAAATCCCACTTATTAATTGTTGGGTTTA
GTGCCTGTGCTAATGATATTCTGTGTAGAAAGCCTTTTACTGTGCCGGTG
AGGTCAAGGCTATTTCCCACTTCCTATACTATCAGGTTCAACATATTTGG
TTTTATGTGGAGGTCTTTGATTCATATGGTGTTGGCCTGTCTATTATTGA
ATGTGAGATACTGCAGTCACCCAGTATCAATGTATGAGTGTCAATTTGTG
ATTTAAGGGCATCTTTTATAAATTTGTGTTCCCTTGTATTTGGTACATAG
ATGCTAAGGATTGAAGTATCCTCTTGGTGGGATTTTTCCTTTGATAAATG
TGATTTTTTGAGTATATTTGGCCTATAGGGATTCATGGGTTTGGACGGCT
GACCATATGGAGTGGTGCTATTAGGATGGATAAACTTGCCGAAGGAAGCG
CGTCTCTTTGGTCGAGGTTTTGAGGACTTCCTAATCTCAGGGTCTTGTCT
TTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_i22.b1 MSMg01no428_i22.b1 CHROMAT_FILE:
MSMg01no428_i22.b1 PHD_FILE: MSMg01no428_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:46 2005
         (454 letters)



>mm_chr10_108236301_108237154
          Length = 854

 Score =  841 bits (435), Expect = 0.0
 Identities = 449/455 (98%), Gaps = 4/455 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtccttctctcttgctttttcttctttcactggtctacctaagcaaaccaaatccttgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtccttctctcttgctttttcttctttcactggtctacctaagcaaaccaaatccttgt 260

                                                                       
Query: 61  tcttttgcaatataatattaaattcaccagtctctttattactaacatgtctaaaatgca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttttgcaatataatattaaattcaccagtctctttattactaacatgtctaaaatgca 320

                                                                       
Query: 121 aactgcattccaatggggagttgtattattattattattgctattattacatcttttttt 180
           ||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||
Sbjct: 321 aactgcattccaatggggagttgtattattattatt---gctattattacatcttttttt 377

                                                                       
Query: 181 tttt-acactccagtcatatttgtttctgtttcctcatcaagtattttcacagccacaat 239
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttttacactccagtcatatttgtttctgtttcctcatcaagtattttcacagccacaat 437

                                                                       
Query: 240 ttctttactttatccacattcttacgacccattcttttctagttctgcctggtaaatctt 299
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttctttactttagccacattcttacgacccattcttttctagttctgcctggtaaatctt 497

                                                                       
Query: 300 aaaaacaaatctagattctgttcatttctctccaaccccttacatgtgcacacactggaa 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aaaaacaaatctagattctgttcatttctctccaaccccttacatgtgcacacactggaa 557

                                                                       
Query: 360 caaccccttacatgtatacacccatctggtcctaagccacaagtatgttagtgagctaac 419
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 caaccccttacatgtacacacccatctggtcctaagccacaagtatgttagtgagctaac 617

                                              
Query: 420 ctccctccctccctttccctacacattttcaatgt 454
           |||||||||||||||||||||||||||||||||||
Sbjct: 618 ctccctccctccctttccctacacattttcaatgt 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)