BAC Information

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BAC

Clone NameMSMg01-429A24
Chromosome10 (Build37)
Map Location 98,740,628 - 98,741,114
singlet/doubletsinglet
Overlap geneLOC100042222
Upstream geneEG667438, EG432494, Atp2b1, Wdr51b, Galnt4, Dusp6
Downstream geneGad1-ps, LOC100042232, LOC667502, Csl, LOC100042246, Kitl, LOC100043208, LOC100043211
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429A24.T7 (MSMg01no429_a24.b1)MSMg01-429A24.TJ (MSMg01no429_a24.g1)
ACCAG521880AG521881
length732757
length of high quality
(start - end)
530 (42 - 571)161 (72 - 232)
definitionCHROMAT_FILE: MSMg01no429_a24.b1 PHD_FILE: MSMg01no429_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:25 2005CHROMAT_FILE: MSMg01no429_a24.g1 PHD_FILE: MSMg01no429_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCGCTATACGACTCACTATTTTCCGAGGATCCGCGGAATTCCTCTG
GTGTACTTGAGTGTAGACCTTCCCAGAAGTCAAGTGTCATAAACTAGGAG
TCATATACTAGGAGTGTCACCAGCAGGAAAAATAGTTTCTTATCACCAAG
AATAGAAAGAAGAGAAATCAACAGACAGTCGTCAACAAACTATCCTAGCT
TGCATTTATTCTCTAAGGGCTGGTTTATCTTTCCCAGAAGTTATTTGTTT
CCCCAAGCTGGATTTTCTTTTACTCCACCGGCTTCACCTATCAGTTCCTA
AGCTGGATCCTCTCCTCCCCCGAGTGACGTTCGATTTCAGCTCTCGGGAG
GCAAATGGAGCTCTGTGAGTTCAAGGCTAGCCTGGTCTACATAGTGAGTT
TCAAGGCCATGGGAGCTACATAACAAGATCCTGCCTATAAAAAAACAAAA
AAGAAAATCTTTGATAAGGTGCCTTTTGTCAGTTTCATCTGCAGCCATTG
CCCCCAACTGAAAGTAAAGGAATTTAGATGGGTTTTCCTTACATACAGAC
GTAGCATTGCTCTAAACACCCAGAACATTAAAAAAAAAAATCATATAACT
CCATGTCCTTCCATACCAGTGGAAAGGAACAAGGCAGAGGGAAGGTTAGA
CCACTTGTCTGAAGCCAGGCAGCTAGTGAAAGAGCCGTAGGTGAACCCCG
CAGTGTAGCTGCAGAGCCTTTGCGCTTAACAC
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACATTTGCATAATACATGGGTAGACTTT
ACACTGTGCACAATAACATGATGCCTACAATTGGGGTTGGGGAGCTGGCA
TTTATACCCTTGAGGAGATGGCCAGAGTCCCTGGGATAAGGTTTATGGGC
TGTGTCCATTAGCCAGGCAGGGGTGTTGCNGAAGAATACTCTCNCNNTTT
ACAGNNAACTAAGGGGNTTGGGNTGGGGGGAACCCTTGTTAAGATCAAAC
AGGGGAGTGACACCTTGATAATTTGGCACGGAAAAAGGGATTCCCGGTTT
GGGTTTAAAGGGGGGAAACCCCCCCTTTTTGGGGGGGGTTCCTTTTTTTG
GGGAAAAGTTTGTTTATCCGGCCTGCGTTCTTCTTTCTCCCCCCCCCCCT
CCTCCCCTTTCGNGTTGGTTGTCTTCCTCTTCCCCCCCCCTTTTTCCCCC
CCCCCCCCCCCCCTCCCTTTTTTCTCCTCTTTTCCTTCNCTCCCNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTTTNNNNTTCTTT
TAATTTTTGCGTCGNAGNNNNGTGNNNNNNNNNTGNNNNNNNNNNNNNNN
NNNGNNCTAGGGNGGNNNNTTTTNGGGNNNCAANGNGGGGGGNNNNNNNT
ACGNNAAANNNGNNNGTGGGNGGGANNNTCTANNNNNAGCNNNNNGGTTT
TNNNTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_a24.b1 MSMg01no429_a24.b1 CHROMAT_FILE:
MSMg01no429_a24.b1 PHD_FILE: MSMg01no429_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:25 2005
         (530 letters)



>mm_chr10_98740628_98741556
          Length = 929

 Score =  882 bits (456), Expect = 0.0
 Identities = 480/488 (98%), Gaps = 1/488 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctctggtgtacttgagtgtagaccttcccagaagtcaagtgtcataaactaggagt 60
           |||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 487 attcctctggtgaacttgagcgtagaccttcccagaagtcaagtgtcataaactaagagt 428

                                                                       
Query: 61  catatactaggagtgtcaccagcaggaaaaatagtttcttatcaccaagaatagaaagaa 120
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 427 catacactaggagtgtcaccagcaggaaaaatagtttcttatcaccaagaatagaaggaa 368

                                                                       
Query: 121 gagaaatcaacagacagtcgtcaacaaactatcctagcttgcatttattctctaagggct 180
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 367 aagaaatcaacagacagtcgtc-acaaactatcctagcttgcatttattctctaagggct 309

                                                                       
Query: 181 ggtttatctttcccagaagttatttgtttccccaagctggattttcttttactccaccgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtttatctttcccagaagttatttgtttccccaagctggattttcttttactccaccgg 249

                                                                       
Query: 241 cttcacctatcagttcctaagctggatcctctcctcccccgagtgacgttcgatttcagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cttcacctatcagttcctaagctggatcctctcctcccccgagtgacgttcgatttcagc 189

                                                                       
Query: 301 tctcgggaggcaaatggagctctgtgagttcaaggctagcctggtctacatagtgagttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tctcgggaggcaaatggagctctgtgagttcaaggctagcctggtctacatagtgagttt 129

                                                                       
Query: 361 caaggccatgggagctacataacaagatcctgcctataaaaaaacaaaaaagaaaatctt 420
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 128 caaggccatgggagctacataacaagatccagcctataaaaaaacaaaaaagaaaatctt 69

                                                                       
Query: 421 tgataaggtgccttttgtcagtttcatctgcagccattgcccccaactgaaagtaaagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  tgataaggtgccttttgtcagtttcatctgcagccattgcccccaactgaaagtaaagga 9

                   
Query: 481 atttagat 488
           ||||||||
Sbjct: 8   atttagat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 929
Length adjustment: 10
Effective length of query: 520
Effective length of database: 919
Effective search space:   477880
Effective search space used:   477880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)