BAC Information

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BAC

Clone NameMSMg01-429I06
Chromosome10 (Build37)
Map Location 62,441,934 - 62,635,227
singlet/doubletdoublet
Overlap geneRufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn
Upstream geneEG432466, 2010107G23Rik, Neurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l
Downstream gene1700120B22Rik, Herc4, Sirt1, Dnajc12, LOC665182, EG631906, Ctnna3, Lrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429I06.T7 (MSMg01no429_i06.b1)MSMg01-429I06.TJ (MSMg01no429_i06.g1)
ACCAG522225AG522226
length740741
length of high quality
(start - end)
249 (61 - 309)338 (79 - 416)
definitionCHROMAT_FILE: MSMg01no429_i06.b1 PHD_FILE: MSMg01no429_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:02 2005CHROMAT_FILE: MSMg01no429_i06.g1 PHD_FILE: MSMg01no429_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,634,979 - 62,635,227)(62,441,934 - 62,442,268)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TCTTTTCGGGACAGCCAGATCTTGGAGAACAGAATATAACATGTGTATAC
ACAGCACCAGACCAAGCCCCAACAGATCATTGTGAAGATCTGGGGCAGAT
GACTTTAGGGATCACAAAAATCCCACAGTGAAGCCAGATGTGGGAGGACA
TGCATGTAATCCCAGCACTCAGAAGGTGGAGGCAGGACAAAAAGCCAAGG
TCGGCCTGGGTAACATAAACAAGTTTCAAGCCAAACTGGGATTCTTAGTA
AGAGCCTATGTTTTTGGGCCTGGAGGAAGATGACTCAGAGGGTAGAGGCA
CCTGTCACCAGGTCTGATGACCTGAGTTCAATTCCTGGGACCCGAATAGT
GGAAGGAGAGAACTGACTCCCACAGGCTGTCCTCTGACCTCCACAAGCAG
GCACGCTCCACCATGGGAAAGCTTTTCACAAATGTAATAAGATCCCTATC
AATGAAAACACCAGCTACATAAAGGTCCGTGGTAGAGAGGGGCTCATAAG
GCTGAAACAGAAGGGGATGGCCCAGAGGAGAGGAGAGACTCAGCCCAGGC
TGACAAAGCCGATCAGAGGTGGAGGTGTGCTTTGACCCCATACATGTCCT
ACGATGCCCCAGAAGAACCGGCACCCAGTTGGGCTAGGCCCTGCAGATGC
TTCGGGAGTGCACACGTACTGCTCCCGGCATGAAGCCCAC
TACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCATAGGAGGGCAGGGAGGG
AGGGTCATGGGACCTTCACAGGAACAACCAGTCTTTCTCTTGCAAGCTGT
TGTATGCAATTCTACCCTAACTGCAAATGGCCTTAGGGAGGAACTAACAT
ATAGGAAGGGAGGGGCTAGTGGAGGGGTGACTATCTGCAGCCAGGAAGGA
GTCATCATTCCTAGAGGGATTTCGAAGTCCTCCCCAGTATCCCCCATAAC
TCACTGCTTCTTCAGCGGGAACGGTGTTAATCATTTTTGGCGTGTCCTCA
GAATTTTGGAAGCATTTGGTAGACGTTGTTTACACCTCACTAAGGAAAGG
ATTTTTTTTTTTTAATCAACAAATACTCTAGGTCTTTCCTCCAACTCCTA
AGAGTTGGTATCTTCTAGGCCCTTTATACCCGCTTACAACGTATCATATT
TTCGTCACTGGCATTGGGCCTCTTGCGTCATTCCCCCCACCTTTTAAAAG
ATGTCCACTCCCTACGCCCCCCATTACCCTTTTTATTCCCACCCCCACCT
TTTTTTCTTTTACCCCCCCCCCTTCTTTTTCTCTTCTTCCCTCCCCCCTC
ATTTTTTTCAATTCTTTTTCCCACCTTATCTCCCTTCGCCCCCCCCTTTA
CCCCTTCTACACCTCCCATCCCTTTCTTCCCCCCCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_i06.b1 MSMg01no429_i06.b1 CHROMAT_FILE:
MSMg01no429_i06.b1 PHD_FILE: MSMg01no429_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:02 2005
         (249 letters)



>mm_chr10_62634907_62635555
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagccagatcttggagaacagaatataacatgtgtatacacagcaccagaccaagcccc 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagccggatcttggagaacagaatataacatgtgtatacacagcaccagaccaagcccc 262

                                                                       
Query: 61  aacagatcattgtgaagatctggggcagatgactttagggatcacaaaaatcccacagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacagatcattgtgaagatctggggcagatgactttagggatcacaaaaatcccacagtg 202

                                                                       
Query: 121 aagccagatgtgggaggacatgcatgtaatcccagcactcagaaggtggaggcaggacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagccagatgtgggaggacatgcatgtaatcccagcactcagaaggtggaggcaggacaa 142

                                                                       
Query: 181 aaagccaaggtcggcctgggtaacataaacaagtttcaagccaaactgggattcttagta 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 141 aaagccaaggtcggcctgggcaacataaacaagtttcaagccaaactgggattcttagta 82

                    
Query: 241 agagcctat 249
           |||||||||
Sbjct: 81  agagcctat 73


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no429_i06.g1 MSMg01no429_i06.g1 CHROMAT_FILE:
MSMg01no429_i06.g1 PHD_FILE: MSMg01no429_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:02 2005
         (338 letters)



>mm_chr10_62441734_62442471
          Length = 738

 Score =  640 bits (331), Expect = 0.0
 Identities = 334/335 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcataggagggcagggagggagggtcatgggaccttcacaggaacaaccagtctttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcataggagggcagggagggagggtcatgggaccttcacaggaacaaccagtctttct 260

                                                                       
Query: 61  cttgcaagctgttgtatgcaattctaccctaactgcaaatggccttagggaggaactaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgcaagctgttgtatgcaattctaccctaactgcaaatggccttagggaggaactaac 320

                                                                       
Query: 121 atataggaagggaggggctagtggaggggtgactatctgcagccaggaaggagtcatcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atataggaagggaggggctagtggaggggtgactatctgcagccaggaaggagtcatcat 380

                                                                       
Query: 181 tcctagagggatttcgaagtcctccccagtatcccccataactcactgcttcttcagcgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctagagggatttcgaagtcctccccagtatcccccataactcactgcttcttcagcgg 440

                                                                       
Query: 241 gaacggtgttaatcatttttggcgtgtcctcagaattttggaagcatttggtagacgttg 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaacggtgttaatcatttttggtgtgtcctcagaattttggaagcatttggtagacgttg 500

                                              
Query: 301 tttacacctcactaaggaaaggatttttttttttt 335
           |||||||||||||||||||||||||||||||||||
Sbjct: 501 tttacacctcactaaggaaaggatttttttttttt 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)