BAC Information

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BAC

Clone NameMSMg01-429I24
Chromosome10 (Build37)
Map Location 114,222,814 - 114,223,248
singlet/doubletsinglet
Overlap geneTrhde
Upstream gene4930473D10Rik
Downstream geneTph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429I24.T7 (MSMg01no429_i24.b1)MSMg01-429I24.TJ (MSMg01no429_i24.g1)
ACCAG522261AG522262
length738757
length of high quality
(start - end)
537 (61 - 597)437 (71 - 507)
definitionCHROMAT_FILE: MSMg01no429_i24.b1 PHD_FILE: MSMg01no429_i24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:05 2005CHROMAT_FILE: MSMg01no429_i24.g1 PHD_FILE: MSMg01no429_i24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAT
AAAATAATGAGAGTGAACATCTAAGCCAGAACACTTTAAAGAATGAGGGG
TCTACCACTGTCTGAGAGACAGTGGGTATAAGTAAGGCATTTGTTATTTA
CCCTCCCTGTTTCTAGTCTCCCTTACACCAAGGAAAAACAGCTTTTTCTC
CCACTGCTCTACTAGAACTGATCTCAACAGGATCAATAATAACCACATGG
TGGCAAAGCTAACATCCAATCCAGAGCTCAACCCATCAGCAGAATGTACA
TTTAGTTGATAATCGAATGTCCTTGAAACAGCTTCTTCCTGTGAGCCAGT
CACTTCTCAATGTTGGGGGGTTCCTTGTTTCAATGCATAGACCTCTTTGC
TCCTCTGTTTACACTCAGTCCTTTAATTATAATGACTAGCTTTGTGTTTG
TGTGACTTCCAAAGTGATGACTTACCTAACAATTCTGGGCTTCCATAATC
ATTAACCAACTGTCCGCTTGACATCTCCACTTTGAATCTCAGACACCACA
TTCCAAAGGCAAATTCCTGCTGATCCATACACATGGATGTTCCTTCCAAA
CCTTCCCCATCTCAGTTAAACACGCTTCCTCCTGCTGTCTGGACCCAAAT
CTCCCAAACCTTTGTTCTCTCAAAAACCAAATATCTGAATGGCTCCGCCT
TCCAGGAACCCCCAATACCGGGGGCTCCCCAAATGATG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCTGATGCTTCTTGATTTCTGGTACGGAC
ATTTCAAGGCTGTACTCATTGGACCATACACAGAAAAGAAACATGAAGAC
ATCTCATTTCCTTTTGTGTCTTCAAAACTTGATGACTGACTCTCAGTGGC
TCAGCTAGCTTAAAGTACCCTAGAAATACTTCTGCCTAGGATATTTTCTT
TAGAGGATCTTAAGAGTACCATCAACCCTATGTACTTATGCTTGCTGCTA
CAACCTGTTTGTAAAGCCACTCTACATTTTTTAGATGTGACTTTTTCTTC
TTAAGGATCTCTGAGTTATCAGTAAACATTTTAACATTTCTACCTAGTGA
TTTTAATGTGGAAGAGATAAAACATGGAGGCATAGAAGACTGAAAGGTCA
GCTGAAAGAAAACTGCAAGACTGTATAATCTAAAAATACCATAATCAGTA
AAAAAAATAAAAAAAAACCAAAAACCAAAAAACGGAAAGCAGAATGGCCA
TAGGGAGCCCTTGTTTATCAACTGTGGAAATGCAGTTTGAAACTCCATTC
TCTTTTCCTGCCACCCCCTTTGAAAACCAACCTGGTTTTCTTCTCCACAG
AATTTCCCCCTTAATAAATGGGGGGGGGAAAGGGAAAAAAAATTTTTCCC
ACCCCCCCCCCACTTTGGAAAGAGAAAGAAAAATTTTGTTTTATCACCCC
CCCCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_i24.g1 MSMg01no429_i24.g1 CHROMAT_FILE:
MSMg01no429_i24.g1 PHD_FILE: MSMg01no429_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:05 2005
         (437 letters)



>mm_chr10_114222614_114223448
          Length = 835

 Score =  787 bits (407), Expect = 0.0
 Identities = 429/437 (98%), Gaps = 2/437 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgatgcttcttgatttctggtacggacatttcaaggctgtactcattggaccataca 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 635 ttctgatgcttcttgatttctggtacagacatttcaaggctgtactcattggaccataca 576

                                                                       
Query: 61  cagaaaagaaacatgaagacatctcatttccttttgtgtcttcaaaacttgatgactgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cagaaaagaaacatgaagacatctcatttccttttgtgtcttcaaaacttgatgactgac 516

                                                                       
Query: 121 tctcagtggctcagctagcttaaagtaccctagaaatacttctgcctaggatattttctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tctcagtggctcagctagcttaaagtaccctagaaatacttctgcctaggatattttctt 456

                                                                       
Query: 181 tagaggatcttaagagtaccatcaaccctatgtacttatgcttgctgctacaacctgttt 240
           |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tagaagatcttaagagtatcatcaaccctatgtacttatgcttgctgctacaacctgttt 396

                                                                       
Query: 241 gtaaagccactctacattttttagatgtgactttttcttcttaaggatctctgagttatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gtaaagccactctacattttttagatgtgactttttcttcttaaggatctctgagttatc 336

                                                                       
Query: 301 agtaaacattttaacatttctacctagtgattttaatgtggaagagataaaacatggagg 360
           ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 335 agtaaacattttaacatttctgcctagtgattttaatgtggaagaggtaaaacatggagg 276

                                                                       
Query: 361 catagaagactgaaaggtcagctgaaagaaaactgcaagactgtataatctaaaaatacc 420
           |||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||||
Sbjct: 275 catagaagactgaaaggtcagctgaaagaaaactccaagact--ataatctaaaaatacc 218

                            
Query: 421 ataatcagtaaaaaaaa 437
           |||||||||||||||||
Sbjct: 217 ataatcagtaaaaaaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 835
Length adjustment: 9
Effective length of query: 428
Effective length of database: 826
Effective search space:   353528
Effective search space used:   353528
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)