BAC Information

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BAC

Clone NameMSMg01-429J01
Chromosome10 (Build37)
Map Location 99,499,777 - 99,500,282
singlet/doubletsinglet
Overlap geneKitl
Upstream geneWdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl, LOC100042246
Downstream geneLOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429J01.T7 (MSMg01no429_j01.b1)MSMg01-429J01.TJ (MSMg01no429_j01.g1)
ACCAG522263AG522264
length747910
length of high quality
(start - end)
504 (37 - 540)---
definitionCHROMAT_FILE: MSMg01no429_j01.b1 PHD_FILE: MSMg01no429_j01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:05 2005CHROMAT_FILE: MSMg01no429_j01.g1 PHD_FILE: MSMg01no429_j01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTA
CCACTGAACCACCAATACTACCTTTATTTTATCTTAATAGAGAGAAAAAT
CCAGGAAACCGAAAAGTTTGGATTTCTGAGACTGCCTGACCTACTTCCTG
ATATAAAGAGGTTTTGTTTGTTTTTCTAAAAAATGCTTTTATTAGCATCG
GTGATTATATACCTAATAACGTTTGGATTATGACATATTATATTTTATAC
TAACTTGCCCCCTACCCCATCACATCCCTTGCTCTCCCCCCCATTGACCC
CCTTCTACTCTAACATCTCCCTCCCCCTCCCCTTGGAGGGTGGTGGTAAC
TCACTGAGTTTCATTAACAGGGTTATTTAGAAAAGTATGGGCGAGAGATT
TGCTTGTCCGACCCTTTGTGTCTTATCAGTGGCTACACCTCTACTGAAAA
CGACTATCCCTCCCCAATTAACCATTAACTGTGTATAAATTCACAGCTTT
TGCTTTGGAGTTTGTTAAAAATGGAAATGGCCCTTGAGACCCCAAGCCAC
AGTCTTAACAGCTATTCTGACAATACTTTACATTTAATTATGTCCCCCGC
GGGAAGCACAAAGGGGTTCTTGGAAGCTCTGGGCTTAATGGTACCTTACC
CCTTCTTTTCTTCTTTTTTGGAATTGCTTGGGACCTCCCAAAAATTTTTC
TTTTTTTTCCAACTCTCTAAAATTCTCCCCGCCTTTCTCTTTCCCCG
CAATATACATAAGAGATANNGTNGGCNNGCCCGTCATACCCACCCAGCGC
GANNNNANNACAAGGTTCCCCAAACACCACCCCAGNNNGNCGACACCCCC
CGACCCACAGNANAGACCCAACCGAATTTACCACAAGACAACACTATTTT
ATCCATTACACCCCTCAGACCCCATTTTCTCCTTTCATAGAGAAGAGGGA
CCCACCCATCCCATTACAACATTTCCCGTCAAAAGATCAACATATTGTAC
CCTCCCCCTCCCTCCTTACCTATATCCCCATTAATTCTTTTATTTTATAA
AACCCTCCCCTCTACCCTATAGCCTACTTTATTCCTCTCCTATCACCCCA
TTTATTACTTACCCCCCCTTTTTTTTTTCTTTCTAAAAAAACCCCCTAAT
TCTTCCCAACCACACAATTCTTTTTCTTTCCCCACATTAACTACATACGG
CCGCCGTCGCTCCTTTTTGCTCCTTCCCCTTNTACCCTCCCCCTTTCTCA
TTAATTATTCCCCCCCCCCCCCCTTTCTCACCCCCCCCCCCTATTCTTCG
CACCCCCCCCTTCTCTCTTCCCCCTCTTTTCTCTTTTTTACACTTTTTAT
TTCCCCCCTTCTCCTCTTTCTTCCGCCCTTTCTTTTCCCCTTTTTTCTTC
CTCTCCTCCTCACTTCATCTTTCCCCCTAACCCACCATATCCTGTATTTA
TCACCACCTTCTCAACCCTTACCCATTTCTCCACACCCACATTCCCGTTT
TTACTCACTTTATTTACCCCTTATCCCCCCCCCCCGTTTACCATACCACT
ATAGCCCCTCACACATCTAATAACCCTCCACATTTTTTTAACCCCTACTC
ACCATTCATACCCCGCGTTATATTATTAAATCTAATCCCCTTTCTATCAT
TATTCTACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_j01.b1 MSMg01no429_j01.b1 CHROMAT_FILE:
MSMg01no429_j01.b1 PHD_FILE: MSMg01no429_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:05 2005
         (504 letters)



>mm_chr10_99499578_99500480
          Length = 903

 Score =  857 bits (443), Expect = 0.0
 Identities = 488/511 (95%), Gaps = 18/511 (3%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattctaccactgaaccaccaatactacctttattttatcttaatagagagaaaaatcc 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattctaccactgaaccaccaatactacctttattttatcttaatagagagaaaaatcc 259

                                                                       
Query: 67  aggaaaccgaaaagtttggatttctgagactgcctgacctacttcctgatataaagaggt 126
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aggaaactgaaaagtttggatttctgagactgcctgacctacttcctgatataaagaggt 319

                                                                       
Query: 127 tttgtttgtt----------tttctaaaaaatgcttttattagcatcggtgattatatac 176
           ||||||||||          ||| |   ||||||||||||||||||||||||||||||||
Sbjct: 320 tttgtttgtttgtttgtttgttttt---aaatgcttttattagcatcggtgattatatac 376

                                                                       
Query: 177 ctaataacgtttggattatgacatattatattttatactaacttgccccctaccccatca 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctaataacgtttggattatgacatattatattttatactaacttgccccctaccccatca 436

                                                                       
Query: 237 catcccttgctctcccccccattgacccccttctactctaacatctccct-ccccctccc 295
           ||||||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 437 catcccttgctct-ccccccattgacccccttctactctagcatct-cctcccccctccc 494

                                                                       
Query: 296 cttggagggtggtggtaactcactgagtttcattaacagggttatttagaaaagtatggg 355
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 cttggagggtggcggtaactcactgagtttcattaacagggttatttagaaaagtatggg 554

                                                                       
Query: 356 cgagagatttgcttgtccgaccctttgtgtcttatcagtggctacacctctactgaaaac 415
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cgagagatttgcttgtccaaccctttgtgtcttatcagtggctacacctctactgaaaac 614

                                                                       
Query: 416 gact--atccctccccaattaaccattaactgtgtataaattcacagcttttgctttgga 473
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gactcaatccctccccaattaaccattaactgtgtataaattcacagcttttgctttgga 674

                                          
Query: 474 gtttgttaaaaatggaaatggcccttgagac 504
           |||||||||||||||||||||||||||||||
Sbjct: 675 gtttgttaaaaatggaaatggcccttgagac 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space:   441142
Effective search space used:   441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)