BAC Information

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BAC

Clone NameMSMg01-429L01
Chromosome10 (Build37)
Map Location 70,862,584 - 70,863,151
singlet/doubletsinglet
Overlap genenone
Upstream gene1200015N20Rik, LOC665398, Phyhipl, EG665429, Bicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk
Downstream geneLOC100039860, LOC216081, EG216082, LOC622812, EG327767, 1700049L16Rik, LOC100040505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429L01.T7 (MSMg01no429_l01.b1)MSMg01-429L01.TJ (MSMg01no429_l01.g1)
ACCAG522359AG522360
length748831
length of high quality
(start - end)
552 (37 - 588)---
definitionCHROMAT_FILE: MSMg01no429_l01.b1 PHD_FILE: MSMg01no429_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:15 2005CHROMAT_FILE: MSMg01no429_l01.g1 PHD_FILE: MSMg01no429_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTT
CTCCATTGTTGAAAGGAATTGTTCAAAACTGGGCTTAGTTTCGATTGGTG
AAGCATGGTCAGCACTTGGGCGGGAGAGGCAGGAGAATTAGGAGTTCAAG
GTCATCCTTGCCTGTACAGGGTGAGTTTGAAGCCAGTCTCAAAACGGCAA
AGCTACCTTAGACAGCTGTGATGACAACTAGAAACAACACATGCGTATTG
TTATGACTCCGTCCCCAGCTTTGTGGTGCTAGTCTGAGGGCTGTGCAGCC
TTAGGGGGCGAGGCTTAGATGAAAACCAGGGGCATCATGGGAAGGGACAT
GCACAGTAGGGAAGGGGTTCTGTAACTTGAAAACTACCAATCAAGACAGA
GAGCCATCTAAACTATATCCCCAGTAACCTAATTCTCCCTTCTCATGAAC
CCCACCCACACACCCAAAACAAAGTTTCAGGCTGAATTAAAAGGACAAAA
ACCATGCCCCGAAGACATTTCCACAAGCCAACCCATTCCAAACAATTCCT
CATAGGGATTCTCTTCCCAGATAATCCTAGGTTAGAGGACAGTGTTGACT
ATTAAAGCTAGCAATCACTTCCAGTTCCTGAGGCCATAAATCAGAACCAT
CCCCCTGCGTAAGGAGGGACCGGATGATTTTTTGTCCAAGGCAAAAACCT
TCCTGATTGGGACCCCCCTTGGAGCTTATAAAACTCTGAAGGTGGGCG
CCGATGCTTTGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACATTCTAGGACAGCCAGAGCTACATAGTGGGA
ACCCGTCTTGAATAGAAGGGGAAGGGGAAGGGGATGCCTAGCCCCCTCCC
CCCTTTTCCCTTCCTCCCGCCCCTCCGCCCCCTTCCCTCTCTCCTTTCCC
TCCTTTTCTCCCCTTTTCTTTCTTCCCCCTCCCTCCTTCCCTTTTCCCTC
TTTTCCTTTTTTTTTTTCCCCCCCCCTCTCCCTCTTCTTCTTTTTTCCTT
CCTTTTCCCCTTTTTTTTCTTCCCCCCCTTTTTTCTTCTTTTTTTTTTCC
CCTGTTTCTCCTCCCCCCTTTTCCTTTCCTTCCTCCCTTTTTCCCCTCCC
CTCCCCTCTCTTTTTTTCTCTTTCCCTTTTCTCTTTCCCCTTTTTTTTCT
TTTCCCCCCCTCCCCTTTTCCTCCCCCCTCTCCTTTTTTTCCCCCCCCTT
TCTCCTCCCCTTTTTTCTTTTTTTTTCCTTTTTTTTCCCCCCTTCCCGCC
TTTTCTCCTCTTTTTTCCTCTTTTTCTTCTTTCCCTCCCCCTTCATTTTT
CCCCCTCTCCCCCCTTTCTTTTTTCTTCTCCCCCTTCCCCCCTTTTCCCC
TTCTCCTTTCCCTCTTTCCCTTTTTTGTTCCCTTTTTTTCCCTCTTTTCC
CCCCCCTCCTTCTCCTTCTCCCTTTCCTCCCCTCTCCTCTTTTTCCCCTT
CCCTTTTTTTTTTCCCTTCTCCCCCTTCCTCTCCCTCCTCTTTTCTTTTT
CTCTTTCTCCCTCTCTTTCTTTTTTTTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_l01.b1 MSMg01no429_l01.b1 CHROMAT_FILE:
MSMg01no429_l01.b1 PHD_FILE: MSMg01no429_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:15 2005
         (552 letters)



>mm_chr10_70862332_70863289
          Length = 958

 Score =  965 bits (499), Expect = 0.0
 Identities = 542/569 (95%), Gaps = 22/569 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttctccattgttgaaaggaattgttcaaaactgggcttagtttcgattggtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 gaattcctttctccattgttgaaaggaattgttcaaaactgggcttagtttcgattggtg 761

                                                                       
Query: 65  aagcatggtcagcacttgggcgggagaggcaggagaattaggagttcaaggtcatccttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 aagcatggtcagcacttgggcgggagaggcaggagaattaggagttcaaggtcatccttg 701

                                                                       
Query: 125 cctgtacagggtgagtttgaagccagtctcaaaacggcaaagctaccttagacagctgtg 184
           |||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||
Sbjct: 700 cctgtacagggtgagtttgaagcccgcctcaaaacggcaaacctaccttagacagctgtg 641

                                                                       
Query: 185 atgacaactagaaacaacacatgcgtattgttatgactcc-------gtccccagctttg 237
           |||||||||||||||||||| || ||||||||||||||||       |||||||||||||
Sbjct: 640 atgacaactagaaacaacacgtg-gtattgttatgactccgacctcggtccccagctttg 582

                                                                       
Query: 238 tggtgctagtctgagggctgtgcagccttagggggcgaggcttagatgaaaaccaggggc 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tggtgctagtctgagggctgtgcagccttagggggcgaggcttagatgaaaaccaggggc 522

                                                                       
Query: 298 atcatgggaagggacatgcacagtagggaaggggttctgtaacttgaaaactaccaatca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atcatgggaagggacatgcacagtagggaaggggttctgtaacttgaaaactaccaatca 462

                                                                       
Query: 358 agacagagagccatctaaactatatccccagtaacctaattctcccttctcatgaacccc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 agacagagagccatctaaactatatccccagtaacctaattctcccttctcatgaacccc 402

                                                                       
Query: 418 acccacacacccaaaacaaagtttcaggctgaa--------------ttaaaaggacaaa 463
           |||||||||||||||||||||||||||||||||              |||||||||||||
Sbjct: 401 acccacacacccaaaacaaagtttcaggctgaatttttccacatcagttaaaaggacaaa 342

                                                                       
Query: 464 aaccatgccccgaagacatttccacaagccaacccattccaaacaattcctcatagggat 523
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 341 aaccatgccccgaagacatttccacaagccaacccattccaaacaactcctcatagggat 282

                                        
Query: 524 tctcttcccagataatcctaggttagagg 552
           |||||||||||||||||||||||||||||
Sbjct: 281 tctcttcccagataatcctaggttagagg 253


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 958
Length adjustment: 10
Effective length of query: 542
Effective length of database: 948
Effective search space:   513816
Effective search space used:   513816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)