BAC Information

Click to search

BAC

Clone NameMSMg01-429N15
Chromosome10 (Build37)
Map Location 25,199,378 - 25,199,871
singlet/doubletsinglet
Overlap geneEpb4.1l2
Upstream geneLOC628537, Ctgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399, Akap7, LOC665800
Downstream gene2010003K15Rik, EG667513, LOC667519, LOC628697, C030003D03Rik, LOC100040851, LOC15352, Samd3, L3mbtl3, LOC435208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429N15.T7 (MSMg01no429_n15.b1)MSMg01-429N15.TJ (MSMg01no429_n15.g1)
ACCAG522483AG522484
length739738
length of high quality
(start - end)
497 (38 - 534)95 (74 - 168)
definitionCHROMAT_FILE: MSMg01no429_n15.b1 PHD_FILE: MSMg01no429_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:27 2005CHROMAT_FILE: MSMg01no429_n15.g1 PHD_FILE: MSMg01no429_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTT
CTGTTAGAAACGACTGCATCTGCTTACCGTAGCATGTAGCCCTTGGTTAA
AGAATAGGCTGATTTTGTTTTTATGGGTCTATTCCAGCTGGAACAGTTTG
AGAGTACCATTGGATTCAAATTGCCAAACCACCGGGCAGCTAAACGGCTA
TGGAAGGTGTGTGTGGAACATCACACTTTCTACAGGTAAGGGAAGAAGTC
TCATGGAGTGGCCAGCTGTACCTTGTCCAAGCCAGATGGGACGGATGGCA
TGGCAGATGCATCTGTGTCCTACATCAGAGTTGTATTTCACAATGGCTAT
CTTTGTTGCCTGTAGCCATGCTTCAGTGTGCCATCTGGTTCTTTGCCTCC
TCTCTCCCCATCACCACCATGGGCCTATCATTGGTCCCTTTTGTTAAGAG
GATCTATCCTGCTCTCAAGCCCCTGTGTCCTAACACACTAGCTACCCCAG
TGTGCTGCTACTGGTTTAATCTGATGTCCTGACATGGCCGTTTCTGTGGT
TATTGATGCAGTGTCACAACCTTGGGTATCAATGCTATTTCAGAAAACTC
TTTTTCAGCACTTATTGGGTCCTCCTTGCTGCCCGCCCATCAGCCCGCCA
GCCCTTCTGCCTCCCCTAGCATCTGAACTATTCCGTCTTCTAGAGCCGTT
CGCCCTGGCCTGGCCTCAGGATTGTTCTCCACGCCGCGC
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTATCCCATCAGATTCAGTGGTTTCCAA
AGTGACTTTGGGGGCAAGACATGGCTGTACATAGACGGAGCAGTGGATGG
AAATCTATTCTGAGTTTATTAAATGGTGATCCTGGGATGGCTGCATTGAA
CAGGCCCTGGTGCACAAAAAGTGACTGACTTACCTTACCTCATTCACAGA
CACAGTGTGTCGCGCACTTCATTGCATGTATGTGTGCTTTGCATCCTGCT
TGCTTTCTTCCTTTTAATTCTTAATGGATTTCCTAGCTTCCAATTTCATT
CAAACTCCTGCCTCTGTTGTCCTGGTACGCTCCAGAACTCCACCATAGGG
ACTGGCCCAGAGCGTGTCCCTTGTCACCAGCAGCACAAAATGACTACTCC
ACACACTATATGGTGCGCGACATTTCATATTCCTGGTATCGCCACACATT
GCTTCCTGGCATCCACAGCCCACCCCTCTCTCACAGTCAGACATTGCCTG
CACCATAAAAAGCCTCCCGCCCGCCTCTCCCTTGCCGAACCTCATTCCGT
GTTTGCCTTATTTGCCCTGTGACCGCCCCCAATCCTACCCCCTCCTCCCC
CCCCTCTTTTCCTCCCACCTTTTTTACCTTCCCCCCATTCTCTTACCCAC
GATTCATTCCTTCTTCCCCTCTCTTTCTTATCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_n15.b1 MSMg01no429_n15.b1 CHROMAT_FILE:
MSMg01no429_n15.b1 PHD_FILE: MSMg01no429_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:27 2005
         (497 letters)



>mm_chr10_25199174_25200071
          Length = 898

 Score =  911 bits (471), Expect = 0.0
 Identities = 489/495 (98%), Gaps = 3/495 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttctgttagaaacgactgcatctgcttaccgtagcatgtagcccttggttaaa 64
           ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 205 gaattccttctgccagaaacgactgcatctgcttaccgtagcatatagcccttggttaaa 264

                                                                       
Query: 65  gaataggctgattttgtttttatgggtctattccagctggaacagtttgagagtaccatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaataggctgattttgtttttatgggtctattccagctggaacagtttgagagtaccatt 324

                                                                       
Query: 125 ggattcaaattgccaaaccaccgggcagctaaacggctatggaaggtgtgtgtggaacat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggattcaaattgccaaaccaccgggcagctaaacggctatggaaggtgtgtgtggaacat 384

                                                                       
Query: 185 cacactttctacaggtaagggaagaagtctcatggagtggccagctgtaccttgtccaag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacactttctacaggtaagggaagaagtctcatggagtggccagctgtaccttgtccaag 444

                                                                       
Query: 245 ccagatgggacggatggcatggcagatgcatctgtgtcctacatcagagttgtatttcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccagatgggacggatggcatggcagatgcatctgtgtcctacatcagagttgtatttcac 504

                                                                       
Query: 305 aatggctatctttgttgcctgtagccatgcttcagtgtgccatctggttctttgcctcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatggctatctttgttgcctgtagccatgcttcagtgtgccatctggttctttgcctcct 564

                                                                       
Query: 365 ctctccccatcaccaccatgggcctatcattggtcccttttgtt-a-agaggatctatcc 422
           |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||
Sbjct: 565 ctctccccatcaccaccatgggcctatcattggtcc-ttttgttcagagaggatctatcc 623

                                                                       
Query: 423 tgctctcaagcccctgtgtcctaacacactagctaccccagtgtgctgctactggtttaa 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgctctcaagcccctgtgtcctaacacactagctaccccagtgtgctgctactggtttaa 683

                          
Query: 483 tctgatgtcctgaca 497
           |||||||||||||||
Sbjct: 684 tctgatgtcctgaca 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 898
Length adjustment: 10
Effective length of query: 487
Effective length of database: 888
Effective search space:   432456
Effective search space used:   432456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)