BAC Information

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BAC

Clone NameMSMg01-430A17
Chromosome10 (Build37)
Map Location 94,924,094 - 94,924,437
singlet/doubletsinglet
Overlap genenone
Upstream geneTmcc3, EG667315, 4921537D05Rik, Plxnc1, Cradd, Socs2
Downstream geneLOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119, Eea1, EG432491
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430A17.T7 (MSMg01no430_a17.b1)MSMg01-430A17.TJ (MSMg01no430_a17.g1)
ACCAG522630AG522631
length796802
length of high quality
(start - end)
351 (77 - 427)380 (76 - 455)
definitionCHROMAT_FILE: MSMg01no430_a17.b1 PHD_FILE: MSMg01no430_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:42 2005CHROMAT_FILE: MSMg01no430_a17.g1 PHD_FILE: MSMg01no430_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGCTTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAAGGATCCGC
GGAATTCATCCTTTCCGCTGAAGGAATTTCTAAATCAAAGCTGGAGAGAA
TCTCTGGAAATATATCTGCATTGGAAGGTGTGATGGTTTGTCTATGCCCT
GCCCAGGGAGTGGCATAATTAGAAGGCATGGCCCTGTTGAAGTAGGTGTG
TCACTGTGGGCATGGGCTATAAGACCCTTGTCCTAGCTACCTGGAAGCCA
GTATTCTGCTGGCAGCCTTCAGATGAAGATGTAGAATTCTCACCTCCTCC
TGCACCATGCCTGCCTATTTGCTGCCATGCTCCTGCCTTGATGCTAATGG
ACTGAACCTCTGAACCTATAAGTCAGCCCCAATTAAATGCCCTTATAAGA
GCTGCCTTGGTTATGGTGTCTGTTCACAGCAGTCAAACCCAAATTAATGA
ATGTTAAAGGAAGTCCTTTATAGAATAAGATCAGAGCATGTCTTATAACA
GTCCCGTTTTCTCCTCTTTCCCCTTTTCTCCCCTTCCCTTTTCTCTCCTC
ATTTTTTTTACTCTTCCCCCCTTTTTTTTCTTCTTTTTCCTTTTCCCTTT
TTTTTCCCTCCCCCCTCCCTTATCCCTTTCTTCTCCTTTATTCTCCCCCT
TCCCCTTTTTTTCCTCCTCTTTTTCCTTTTCCCTTCCTTTTTTCTTCTTT
TCCCCCTTTTTCTTCCTCTTTCTACCCCTACCCTTCCTCCCCCTTCTCTT
TTTTCTCCACTTTTCTCTTTTCATTTATTTCTCACTCTTCCTTCTN
CACGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGTGTGCCCAATGCCAGGCACAA
CATCTGGCATATGTAACAGGTGCCCCACCCTTTTTGCACCCCCCCCCCCC
AGCCTGTATGTGCTAGTTAGGGTAACTGTTGAGATAACTGTCCAAATGAG
AACCACTTAACAGGGTCCTTCAAATTTCTTAGTTATGTTACAGTGTAACT
CTGGTCAGCGAGGGGAACACATCTGTGATCCACACAGTCATTCAGGGACA
CAGGCTCCATCCAGAAGGTGTCTTCCTCTTTCCTTGGAGCTGTGGACTCC
TCTACTGGGTCCTGTGTATCTGCCTGGGAAGCAAGGAAGAAAGAATATAG
AGAACAAAGGGTTATGTGCTTGGGGTTCTGGCCAGCCCTCTGTAGGCATA
ATGGTTTTGTGCACTGTGTAAAGGCTATCCTGGTGTTATTCAAATGTCGA
TTTCTCTGCCCTACTTTCCTGTTTCTATCCACATGTCGGTTCTGTATTGT
TTATTCTTAAATGGCCCTTCCCCTCATGTCCACATTCCATATACCTTCCC
TATATATTCTTCAGGCCTTGTTGGAATATATTTTGTTATCTACCTACAAT
CATTGTCTTCCATTTTTTATTTCTCGTATCCACCCCCCATAATTTTATAT
TATTATACACCACAAACCCTGACATCCGTCTCTCATCTCTTACTATTCCA
CTAACTAATTATATTACTCTTACCAATCTATAATCATCTACTACAAAACT
AC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_a17.g1 MSMg01no430_a17.g1 CHROMAT_FILE:
MSMg01no430_a17.g1 PHD_FILE: MSMg01no430_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:42 2005
         (380 letters)



>mm_chr10_94924094_94924869
          Length = 776

 Score =  615 bits (318), Expect = e-180
 Identities = 339/348 (97%), Gaps = 4/348 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   tgtgtgcccaatgccaggcacaacatctggcatatgtaacaggtgccccaccctttttgc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tgtgtgcccaatgccaggcacaacatctggcatatgtaacaggtgccccaccctttttgc 285

                                                                       
Query: 63  accccccccccccagcctgtatgtgctagttagggtaactgttgagataactgtccaaat 122
           |    ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 a----ccccccccatcctttatgtgctagttagggtaactgttgagataactgtccaaat 229

                                                                       
Query: 123 gagaaccacttaacagggtccttcaaatttcttagttatgttacagtgtaactctggtca 182
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 228 gagaaccacttaacagggtccttcaaatttcttagttatgttacagtgtaactctgttca 169

                                                                       
Query: 183 gcgaggggaacacatctgtgatccacacagtcattcagggacacaggctccatccagaag 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 gcgaggggaacacatctgtgatccacacagtcattcagggacacaggctccatccagaag 109

                                                                       
Query: 243 gtgtcttcctctttccttggagctgtggactcctctactgggtcctgtgtatctgcctgg 302
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 gtggcttcctctttccttggagctgtggactcctctactgggtcctgtgtatctgcctgg 49

                                                           
Query: 303 gaagcaaggaagaaagaatatagagaacaaagggttatgtgcttgggg 350
           || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  gatgcaaggaagaaagaatatagagaacaaagggttatgtgcttgggg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 776
Length adjustment: 9
Effective length of query: 371
Effective length of database: 767
Effective search space:   284557
Effective search space used:   284557
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)