BAC Information

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BAC

Clone NameMSMg01-430F14
Chromosome10 (Build37)
Map Location 101,017,011 - 101,017,414
singlet/doubletsinglet
Overlap genenone
Upstream gene4930430F08Rik, 1700017N19Rik
Downstream geneMgat4c, LOC667652, Nts, Pamci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430F14.T7 (MSMg01no430_f14.b1)MSMg01-430F14.TJ (MSMg01no430_f14.g1)
ACCAG522864AG522865
length805841
length of high quality
(start - end)
405 (50 - 454)276 (77 - 352)
definitionCHROMAT_FILE: MSMg01no430_f14.b1 PHD_FILE: MSMg01no430_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:09 2005CHROMAT_FILE: MSMg01no430_f14.g1 PHD_FILE: MSMg01no430_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTTGATTCCCATTTCTTGGGGCTGAATTACAGGTGGATGC
ATACGAGCAGATGCAGTCTCAGCAAACAGAACATGGGTCCTCTGAAATAG
TGGTTCTGCTTTACCCCTGAGCCGTGATCTGATGACTTGATACTTATTTC
CTTTACTAACAGCTTTTAATATGTGTCCATCTATAAATGTCTAAATACAT
AACTCTTAGTGACCATTCACTTTAAAACAACATGTCTGGCCACTGACATG
ACTCAGTAGGTAAAGCAAGATTTGTCTAATAGTTCTGCAATTGAGCTCAA
CGCTGAGAACCTATACAAAGGTGAATGGCATTTTTGTAGTTGTCCTCTGT
CCTTAAGTGGATCACTTTGCCCCCCAACCCCGTGTGTGTGTGTGTGTGTG
TGTGNNTNTNNNNNNNNTTTCTCTTTTTTTTTCCCCTTTTTTTTTCCTCT
CCTCTTTTCCCTTCTTTTCTTTTCTTTCTTCTTCCCCTTCTTTCCTTTTC
TCTCTTTCCTTTTCTCTCCTCTTCTTTCCTCCCTCTCCCCTTTTTTTTTT
TTCCTTCCTTTCCTTTCTTTTCTCCCCTTTCCTCTCCTCCTTCTTTTTTC
TTCTCTTTTCTTTTTCCTTTTTTCTTTTTTTCTTTTCTCCTCTCCCTTCT
TTCTCCTCTTTTTCCCTTCGTTTTCCTTCCCTCCTTCTTTCTCTTCTCCT
TTTTCATTTCTCTTTTTATTCCCTTCTTTTCCCTCTTCTCTCTCTCCTCT
TTTTT
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTCAGCTATTAAGAATGAGGAC
ATCATAAATTTTGGAGGCAAATGGGTGGAACTAGAAAAATCATCCTGAGT
GAGGTAACCTAGACCCAAGGTACATATATGGTATGCTGTCCCTAATAAGT
GGATATTAGGGAAAAATGCCCATGACACAACCCACAGATCTTAAATCTTA
AGAAGTTTAACAAGCAGAAAGGCCCAAGTGAATGGCTTTCCATCCCACTT
AGAAATGAGAAGAAAATAATCATGTTAGGCAGAGGGAGGTAGGAACTTAG
GTGGGCAAGGGGAGGTCACCCTCCATCTTCCCCCTTATTCTTCGCTTCTC
ATCTATCTTCTTCCTCCTCCTTTCACTTCGCTTCTTCTTTACCCCCCCTC
TCTTCCTTCTACTCTTTCCCTTTTTCCTCTTCTCTCCCTCTTTCGCCCCC
TTTCTTCTTCTCCTCCTTTTATTCCTTCTTTTCCCTCTTCCTCTCCTCTT
TTTTTCTTCCCATATTTCCCCCCTCTCTCTCCTATTTTTCTTTTCCACCC
CCTCCCCTATCTTCTTCTCTCCTCCTCCGTTTCCTTTTCCGCCTTTTTCC
TCTTTCTCTCTTCCTTCCCTTCTTTTATTCCCTTTCTCTCCTTTCCCTCC
CTTCCCTCCCTCTTCCCCTTTTTCTTCCATGTTCCTATACCCCCCTTCTC
TCTTATCCCCTCTTCTTCCTTCTCCCTTTCTATTTCGTCCCTTTCCCTTC
CCCTCCCCTTTCTATCTCCCTTTTACGCCCCCTTCCTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_f14.b1 MSMg01no430_f14.b1 CHROMAT_FILE:
MSMg01no430_f14.b1 PHD_FILE: MSMg01no430_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:09 2005
         (405 letters)



>mm_chr10_101016808_101017614
          Length = 807

 Score =  692 bits (358), Expect = 0.0
 Identities = 392/404 (97%), Gaps = 2/404 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagttgattcccatttcttggggctgaattacaggtggatgcatacgagcagat 63
           |||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagttgaaacagatttcttggggctgaattacaggtggatgcatacgagcagat 263

                                                                       
Query: 64  gcagtctcagcaaacagaacatgggtcctctgaaatagtggttctgctttacccctgagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcagtctcagcaaacagaacatgggtcctctgaaatagtggttctgctttacccctgagc 323

                                                                       
Query: 124 cgtgatctgatgacttgatacttatttcctttactaacagcttttaatatgtgtccatct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cgtgatctgatgacttgatacttatttcctttactaacagcttttaatatgtgtccatct 383

                                                                       
Query: 184 ataaatgtctaaatacataactcttagtgaccattcactttaaaacaacatgtctg--gc 241
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||
Sbjct: 384 ataaatgtctaaatacataactcttagtgagcattcactttaaaacaacatgtctgtggc 443

                                                                       
Query: 242 cactgacatgactcagtaggtaaagcaagatttgtctaatagttctgcaattgagctcaa 301
           |||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct: 444 cactgacatgactcagtaggtaaagcaagatttgccgaaaagttctgcaattgagctcaa 503

                                                                       
Query: 302 cgctgagaacctatacaaaggtgaatggcatttttgtagttgtcctctgtccttaagtgg 361
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 504 cgctgagaacctatacaaaggtgaaaggcatttttgtagttgtcctctgtccttaagtgg 563

                                                       
Query: 362 atcactttgccccccaaccccgtgtgtgtgtgtgtgtgtgtgtg 405
           ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 564 atcactttgcccccccaccccgtgtgtgtgtgtgtgtgtgtgtg 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 807
Length adjustment: 9
Effective length of query: 396
Effective length of database: 798
Effective search space:   316008
Effective search space used:   316008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)