BAC Information

Click to search

BAC

Clone NameMSMg01-430K01
Chromosome10 (Build37)
Map Location 92,035,881 - 92,036,374
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041799, LOC667203, LOC216229
Downstream geneLOC100041814, Nedd1, Gm872, 4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430K01.T7 (MSMg01no430_k01.b1)MSMg01-430K01.TJ (MSMg01no430_k01.g1)
ACCAG523077AG523078
length754756
length of high quality
(start - end)
455 (51 - 505)494 (81 - 574)
definitionCHROMAT_FILE: MSMg01no430_k01.b1 PHD_FILE: MSMg01no430_k01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:34 2005CHROMAT_FILE: MSMg01no430_k01.g1 PHD_FILE: MSMg01no430_k01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTCAGCTCTGAGCCCCATTTTTAATGGGGTTTTAGC
CCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGA
AACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGA
TTTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACGGAGTTTGGAGC
TGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACC
CCATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTT
TATTGAAAGGACGCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCC
CAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAG
GGCTCCCAATGGAGGAGCTAGAGAAGATAGCCAAGGAGCTAAAGGGATCT
GCAACCCTATAGGTGGAACAACATTATGAGCTAACCAGTACCCCGGAGCT
CTTGACTCTAGCTGCATATATATCAAAAGATGGCTTAGTCGTCCATCACT
GGAAAGAGAGGCCCATTGGACCTGTAAACCTTATAAGCCCCAGTACCGGG
CAACACCACGTCTCAAATTGTTTCATTGCCTGTTTTTCCCCTACGCCCCC
TTCCTTTTTTTTTCCTTTATTCCCCTTCTCTATTCTATTTACCCCCTACC
CTCN
NTTCTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGATCTCCATGTCAATT
GTGATTTTTTAAAAAAAAAATCTGAGAGCTGTTCTTCATGCAGCGAAAAA
GCCCTTGCTGTTATTTAAGGTTTTAATTTAATATTCATTTTATTAAAAGT
ACATTAAAAACCCAGCATTTTACAAACCTGTAAGTTCACCTTACACATTT
TAATATTTGATTTATGAATCTAGTAAATTTTAACAATTGCTTTCAAGGGA
GTCTTTGAATAATGTTTGAACCATTTAAGTTGAATACATTTAACTCTCGG
GCAGGTCCCTTTACAGCTCGGTTAATAAAATCTCCTTAAGTATTTATACT
ATGTATAAATTTAACACATTCAGTTTTCTTTTTAAGTTTTTCAGATGCCC
AAAGTATGAGACAAACTTTAACAATGCCAGTGAATCTAATAAATAACAAG
TCACGTGTTCTCTGAACCATTTCAATACTTTTAAGCTTCATTAGATTCTT
TGTATCTTTCTACTTACAGGTGATGGCCTAAAAATCCATTCCTCAATTAA
ACCTTTAAATGGGAATACTAAAAGCTAATCTGGCATATTCACGGATAAGG
CATACGCCCCTTAAATCCTAAAAACTTCCCTAACCTCGCTAAAACCACAA
AAATTGCTTTTTCTTTTCCCAAATTATACCATAAAATTTTAACTGCTTAA
TGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_k01.g1 MSMg01no430_k01.g1 CHROMAT_FILE:
MSMg01no430_k01.g1 PHD_FILE: MSMg01no430_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:34 2005
         (494 letters)



>mm_chr10_92035563_92036456
          Length = 894

 Score =  955 bits (494), Expect = 0.0
 Identities = 494/494 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcgatctccatgtcaattgtgattttttaaaaaaaaaatctgagagctgttcttcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 atgcgatctccatgtcaattgtgattttttaaaaaaaaaatctgagagctgttcttcatg 753

                                                                       
Query: 61  cagcgaaaaagcccttgctgttatttaaggttttaatttaatattcattttattaaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 cagcgaaaaagcccttgctgttatttaaggttttaatttaatattcattttattaaaagt 693

                                                                       
Query: 121 acattaaaaacccagcattttacaaacctgtaagttcaccttacacattttaatatttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 acattaaaaacccagcattttacaaacctgtaagttcaccttacacattttaatatttga 633

                                                                       
Query: 181 tttatgaatctagtaaattttaacaattgctttcaagggagtctttgaataatgtttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tttatgaatctagtaaattttaacaattgctttcaagggagtctttgaataatgtttgaa 573

                                                                       
Query: 241 ccatttaagttgaatacatttaactctcgggcaggtccctttacagctcggttaataaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ccatttaagttgaatacatttaactctcgggcaggtccctttacagctcggttaataaaa 513

                                                                       
Query: 301 tctccttaagtatttatactatgtataaatttaacacattcagttttctttttaagtttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tctccttaagtatttatactatgtataaatttaacacattcagttttctttttaagtttt 453

                                                                       
Query: 361 tcagatgcccaaagtatgagacaaactttaacaatgccagtgaatctaataaataacaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tcagatgcccaaagtatgagacaaactttaacaatgccagtgaatctaataaataacaag 393

                                                                       
Query: 421 tcacgtgttctctgaaccatttcaatacttttaagcttcattagattctttgtatctttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tcacgtgttctctgaaccatttcaatacttttaagcttcattagattctttgtatctttc 333

                         
Query: 481 tacttacaggtgat 494
           ||||||||||||||
Sbjct: 332 tacttacaggtgat 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)