Query= MSMg01no430_k13.b1 MSMg01no430_k13.b1 CHROMAT_FILE:
MSMg01no430_k13.b1 PHD_FILE: MSMg01no430_k13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:37 2005
(271 letters)
>mm_chr10_53046399_53047069
Length = 671
Score = 511 bits (264), Expect = e-149
Identities = 267/268 (99%)
Strand = Plus / Plus
Query: 4 ggaattcaactaattactttactttcattattaggtaactactactaaatcaaattggac 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaactaattaatttactttcattattaggtaactactactaaatcaaattggac 263
Query: 64 aaaagtcactgatagcatagtaataaatcataatatagttaaactacaaaatggaaatag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaaagtcactgatagcatagtaataaatcataatatagttaaactacaaaatggaaatag 323
Query: 124 atacaaaatgtgataccacacacctgtaaacccagcacataagagacaaaggcaggaggg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atacaaaatgtgataccacacacctgtaaacccagcacataagagacaaaggcaggaggg 383
Query: 184 tcaggagcagtctggatcctctacaacacagcaagtttgaggctagcctgtaatacaaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcaggagcagtctggatcctctacaacacagcaagtttgaggctagcctgtaatacaaga 443
Query: 244 cattcccaccctacccatcactcaaaag 271
||||||||||||||||||||||||||||
Sbjct: 444 cattcccaccctacccatcactcaaaag 471
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 671
Length adjustment: 9
Effective length of query: 262
Effective length of database: 662
Effective search space: 173444
Effective search space used: 173444
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no430_k13.g1 MSMg01no430_k13.g1 CHROMAT_FILE:
MSMg01no430_k13.g1 PHD_FILE: MSMg01no430_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:37 2005
(482 letters)
>mm_chr10_53193265_53194146
Length = 882
Score = 609 bits (315), Expect = e-178
Identities = 363/389 (93%), Gaps = 17/389 (4%)
Strand = Plus / Minus
Query: 111 agccagaactataatcttaggtgttgccccacccacaatgagctgggccctttcacatca 170
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 874 agccagaactataatcttaggggttgccccacccacaatgagctgggccctttcacatca 815
Query: 171 atcaaaaattaagaaaaataccccatagtccaattttatagatgcattttctcaatcaac 230
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 814 atcaaaaattaagaaagataccccatagtccaattttatagatgcgttttctcaatcaac 755
Query: 231 actccctctcctctgatgacttta--------------gt---ttgtatcaaacagacat 273
||||||||| |||||||||||||| || |||||||||||||||||
Sbjct: 754 actccctcttctctgatgactttatttattttatgtctgtttattgtatcaaacagacat 695
Query: 274 aaaactaacgagggcacttatatatacacaagggaagtcttatccctgtgaagactatca 333
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aaaactaacgagggcacttatgtatacacaagggaagtcttatccctgtgaagactatca 635
Query: 334 aacctttggtttgatggacatctattgctagatgtttttgttctggatgctgacaagctt 393
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 634 aacctttggtttgatggacatctattgccagatgtatttgttctggatgctgacaagctt 575
Query: 394 tctgtccctacttgagactattttggtctgatccacagtgttgaggctttgcactgactt 453
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 574 tctgtccctacttgagactattttggtctgacccacagtgttgaggctttgcactgactt 515
Query: 454 cagttttatctgataactccatgcttcct 482
|||||||| ||||||||||||||||||||
Sbjct: 514 cagttttacctgataactccatgcttcct 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space: 411584
Effective search space used: 411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
