BAC Information

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BAC

Clone NameMSMg01-431F12
Chromosome10 (Build37)
Map Location 38,306,979 - 38,307,432
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn, LOC629337
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431F12.T7 (MSMg01no431_f12.b1)MSMg01-431F12.TJ (MSMg01no431_f12.g1)
ACCAG523624AG523625
length779759
length of high quality
(start - end)
451 (42 - 492)447 (69 - 515)
definitionCHROMAT_FILE: MSMg01no431_f12.b1 PHD_FILE: MSMg01no431_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:37 2005CHROMAT_FILE: MSMg01no431_f12.g1 PHD_FILE: MSMg01no431_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGCATCCGCGGAATT
CTGCATTTTTCCCACCCTGTACATTTCAGTGCGTCGTCTAGAAAAGGTCA
GGAAAGAGGGATCTTGAATGTGCCTTAAGGAAACTGTAAGGTTAATAGCA
CTCACCCTTTGTGTTGTAGTTGACTAAGAAATGATACTGCACTGAGCCAC
AGTTTAATGTAGGGAGATGGAAATTGCCCATCACTGGTCAAAGTATGCTA
GTCACAAGGGGATGAATTAGGAGAATGTTTATGCAACAGAGGCTCAAAGG
TATTCATGGTATTCATATGATACTGATCATTATATTACATGAAACTGATC
ATTATATTACAAGACAAGTGACTAGGAAGCTGAATATTCTGTAGGGAGGC
TGGACATGGCAAGAAAATCAACTTTATCATGGACTGGATGTTTTCAGGTT
CTTGGCTTTTTTTATTAGATATTTTCTTTATTTACATTTCAAATGTTCAA
ATGTTATCCCCTTTCCTGTTTTCCTCTCTGAAAATCCCCTATTCCCTCCC
CCCTTGTCCTGTTTTCCAAACCCATCCACGGGTTTCTTCCTGGCCCTGGA
TTTCCCCTACACCCCCCCCATTGATGACCAACTATGGCCCCCCCCTGCTA
CCTATGGTCGCTAAAGAAACCAAGCCTTCCCCCGCGGTTTTCTTATATAT
GGCTCCCCCCCACTGTTGAGGATTTTATGAAAATCCCCCTCTCCAACCAT
AAAGGTTTTTTTCGGTCCTCCAAAAACAT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTTATAGGCTTAGATCTTCAGGTACAGAATT
TAACATACATAGCAACAGACCAAATCTTAACAATTATATTTGGGAGCTTA
CTTTAGAATTATACTTCCCTGCAATCTGAATATGAGGACACTGAATTATT
TATTTTGTGAATTGTATTGATCCTGTAGACCTGACAAATGTCATTTAATG
CATTGATTAGCAGTCTAAATATTCACATTTGAAAACAGATCTAATTCATT
GTTGAAAGTTTTCTGATACTAATGTTTGATTTTGAAAGGCAAGAAAGCAT
TCTCTGGGTTGAGAAAATAAGTGTAAAAACAGTGGTGAATAATCAGAACT
ATCCCCTACAATTATAATTTCTCTGCTTCAAAATTTCAGAAATCCTGTGA
CTCCACAGAGTGCCTAATACATTCAGGTAATTCTATATAGGTGTGAATAT
GATAGGTAGTTTTAGAGTGAACCCCTTTTTCCTTTTTTTCCTTTCTTTTC
CCCCTTTCTTCCCTTCTTTTCCCCCTCTTTTTTTTCTCTCCCTTTTTTCC
CTTCTTCTTTTTCTCTCTCTTCCCTTTTTCTTCCTCTTTATCCCTTCCCC
TTTTCTCCCTTTTCCCCCCTTTTTATTTTTTTCCCCCCCCCCTCTTATCT
TATCCTTCCACTTTCTTTCTTTCCACCTTTTCTCTATTTTTTCCTCCCTT
TTCTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_f12.b1 MSMg01no431_f12.b1 CHROMAT_FILE:
MSMg01no431_f12.b1 PHD_FILE: MSMg01no431_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:37 2005
         (451 letters)



>mm_chr10_38306775_38307632
          Length = 858

 Score =  810 bits (419), Expect = 0.0
 Identities = 443/455 (97%), Gaps = 9/455 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcatt--tttcccaccctgtacatttcagtgcgtcgtctagaaaaggtcagga 62
           ||||||||||||  ||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 gaattctgcattcattt-ccaccctgtacatttcagtgtgtcgtctagaaaaggtcagga 263

                                                                       
Query: 63  aagagggatcttgaatgtgccttaaggaaactgtaaggttaatagcactcaccctttgtg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagagggatcttgaatgtgccttaaggaaactgtaaggttaatagcactcaccctttgtg 323

                                                                       
Query: 123 ttgtagttgactaagaaatgatactgcactgagccacagtttaatgtagggagatggaaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgtagttgactaagaaatgatactgcactgagccacagtttaatgtagggagatggaaa 383

                                                                       
Query: 183 ttgcccatcactggtcaaagtatgctagtcacaaggggatgaattaggagaatgtttatg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgcccatcactggtcaaagtatgctagtcacaaggggatgaattaggagaatgtttatg 443

                                                                       
Query: 243 caacagaggctcaaaggtattcatggtattcatatgatactgatcattatattacatgaa 302
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 444 caacagaggctcaaaggtattcatggtattcatatgaaactgatcattatattacatgaa 503

                                                                       
Query: 303 actgatcattatattacaagacaagtgactaggaagctgaatattctgtagggaggctgg 362
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 504 actgatcattatattacaagataagtgactaggaagctgaatattctgtagggaggctgg 563

                                                                       
Query: 363 acatggcaagaaaatcaactttatcatggac------tggatgttttcaggttcttggct 416
           |||||||||||||||||||||||||||||||      |||||||||||||||||||||||
Sbjct: 564 acatggcaagaaaatcaactttatcatggacatggactggatgttttcaggttcttggct 623

                                              
Query: 417 ttttttattagatattttctttatttacatttcaa 451
           |||||||||||||||||||||||||||||||||||
Sbjct: 624 ttttttattagatattttctttatttacatttcaa 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 858
Length adjustment: 10
Effective length of query: 441
Effective length of database: 848
Effective search space:   373968
Effective search space used:   373968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)