BAC Information

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BAC

Clone NameMSMg01-431I19
Chromosome10 (Build37)
Map Location 38,089,522 - 38,089,958
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100040915, Lama4, 1700025K23Rik, Tube1, EG624165, LOC100040964, Fyn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431I19.T7 (MSMg01no431_i19.b1)MSMg01-431I19.TJ (MSMg01no431_i19.g1)
ACCAG523782AG523783
length764748
length of high quality
(start - end)
476 (40 - 515)438 (68 - 505)
definitionCHROMAT_FILE: MSMg01no431_i19.b1 PHD_FILE: MSMg01no431_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:54 2005CHROMAT_FILE: MSMg01no431_i19.g1 PHD_FILE: MSMg01no431_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
TTTCCTTAGGTGAAAAAGGCAATATTTCAAGGGGTGGGGCTGAAGGTGCT
ACTTCTTCAGGTGAGGTAAATCCTTGAGAATCTGAGGATTCAAAGCTCTC
AGCTTTAATAGGGAACTCTCACACATCCCCATCCCAAGTTATAGGATCCA
TTCTTTGCCAATTAATGCCATTACTTTAATTGGTGGCACCCTCTGAGGTT
GAGCCTTGAATTTTGCTGTAATTCAGACCCCTTATAAGAGGGCCTTGGAT
TGATATTCTGCAACTGGAGCTACAGAGCTACTGGAGAGAAGATTCTCTTC
AAGGGCACACTTAGAAACCTTTAGATTGTTTATTCATATCTGGAGCCTTT
CAATTTTATCATACACTCCATTCCTCCCTTTTATCAATTCATCCAGAGAT
GCTAAGAGCAATATGCCAGCAAAATCATTTTCCTTATTTGCCCCCAAACT
GTAGATATTTTTGTATACAGGACCACATAATCCATTGCCAGTCACAATTG
ATAGATCAAGATAGTAAAAAACATTTACTTCTTTAAGTTTAAATATAGTT
CCCACCAGGGGCCCTTCATATTCTCTAATCTCCCACGAAGGTTAAGAAGG
CCCAGCCCTGGGGATGCCGGGCTAGGAAAACTGAATAAAGGGGAGCCAAA
CCCGCCCCGGGAAAGGAAATTTTGTTTCCCTCCCCAAAGATAAAAGGAAT
TGGGAATCGGGAAA
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGTATTTCTGACATGATACCTAATTCTATAGT
ATTCTTGACTAACCTTTACTTGAGTTCAAATTTGATAAGAATTTCTTTTG
TTTTGTTACTTAGTTCTAGTATAAAAATTGTTGTCTATTGTTTAAACGCT
ATGCCACTCTCCAAGGCTTAAAAATTTAACATTATAATAATATATATCTG
TTTGAAATAAGTATATAAAGTCAAGGCTATACAAAGGAAAGGATGCAATT
AGAGTTTCTGTAATTACAGTCTTTGAATGTCACATTTGGTGCTAAGCATG
CTAGCAGCAAGGGCAAACAAGGGGACAATTCTAAATACTATAATTTCCAA
TATCTGCCAAAAGAAAACACACCAATTCTTTAGGAGAAATACAATTTTTC
TTTGTATGGTGAAACTTAATAAAAGTTCTCTTCATGGCAGCCAAACTCAC
TTTAAATGCCATAAGAAATGGGAGCTATTTTCAGTGCCCCTCTCTATAAT
AATGTTCCCCTAATTTTTACTGTGCTTATAAGACAGTGTTGTGATTATAT
GTAAGGATTTTGGNAGGACTATCAGACATGTGGGTTTTTTGTAATAAACT
TGAAAAAAGGGAATACAGTAATAGGATCTGGAAAGGGCCACCAAAAAAGA
AAAAGCTTGTTTAAATTTTCCAAAAAAAAGTTTGGACCGGGAAAATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_i19.g1 MSMg01no431_i19.g1 CHROMAT_FILE:
MSMg01no431_i19.g1 PHD_FILE: MSMg01no431_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:54 2005
         (438 letters)



>mm_chr10_38089142_38089979
          Length = 838

 Score =  830 bits (429), Expect = 0.0
 Identities = 435/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   agtatttctgacatgatacctaattctatagtattcttgactaacctttacttgagttca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 agtatttctgacatgatacctaattctatagtattcttgactaacctttacttgagttca 758

                                                                       
Query: 62  aatttgataagaatttcttttgttttgttacttagttctagtataaaaattgttgtctat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 aatttgataagaatttcttttgttttgttacttagttctagtataaaaattgttgtctat 698

                                                                       
Query: 122 tgtttaaacgctatgccactctccaaggcttaaaaatttaacattataataatatatatc 181
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 697 tgtttaaacgctatgccactctccaaagcttaaaaatttaacattataataatatatatc 638

                                                                       
Query: 182 tgtttgaaataagtatataaagtcaaggctatacaaaggaaaggatgcaattagagtttc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tgtttgaaataagtatataaagtcaaggctatacaaaggaaaggatgcaattagagtttc 578

                                                                       
Query: 242 tgtaattacagtctttgaatgtcacatttggtgctaagcatgctagcagcaagggcaaac 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tgtaattacagtctttgaatgtcacatttggtgctaagcatgctagcagcaagggcaaac 518

                                                                       
Query: 302 aaggggacaattctaaatactataatttccaatatctgccaaaagaaaacacaccaattc 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aaggggacaattctaaatactataatttccaatatctgccaaaagaaaacacaccaattc 458

                                                                       
Query: 362 tttaggagaaatacaatttttctttgtatggtgaaacttaataaaagttctcttcatggc 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 457 tttaggagaaatacaatttttctttgtatggtgaaacttaataaaagttcttttcatggc 398

                            
Query: 422 agccaaactcactttaa 438
           |||||||||||||||||
Sbjct: 397 agccaaactcactttaa 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)